PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016461325.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 1059aa MW: 118429 Da PI: 6.7248

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016461325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	331	424	1	47
TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkqcksrwqky 47 r+ W++eE e l+++vkq + +W+ +a++ gR++ +c+srw+++ XP_016461325.1 331 RKEWSKEERENLAKGVKQQFQEmllqrsvdllsnedgrsgesgdldgliasirdvvitpetmrlflpkvNWDQVASMYIPGRSGAECQSRWLNW 424 789**************999**************************************************9888**********98 PP
2	Myb_DNA-binding	41.4	3.4e-13	484	528	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r WT+eEd +l av+ +G +W ++a+ + gRt+ qc +rw k XP_016461325.1 484 RREWTEEEDIKLCAAVETFGESNWQLVASVIE-GRTGPQCSNRWIK 528 678***************************.*********87 PP
3	Myb_DNA-binding	37.3	6.4e-12	538	595	2	46
SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 g+W+++Ed++l+ av ++ ++ Wk+I ++++ gRt qc++rw + XP_016461325.1 538 GKWSADEDKRLKVAVMLFHPKswrnigqsvpcrapIWKKITQYVP-GRTHVQCRERWVN 595 89***************99********************.*********87 PP
4	Myb_DNA-binding	48	2.8e-15	605	647	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eEd++l+ a+ ++G W+++a++++ Rt++qc+ rw + XP_016461325.1 605 KWTEEEDLKLKSAIDEHGYS-WSKVAACVP-PRTDNQCRRRWKVL 647 8***************99.*****.9********865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.992	326	425	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.3E-10	329	352	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-6	330	427	IPR001005	SANT/Myb domain
CDD	cd00167	0.00409	388	424	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-10	400	434	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.69E-12	407	475	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.98	426	478	IPR017877	Myb-like domain
SMART	SM00717	0.022	430	480	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.5E-8	435	484	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.04E-18	464	535	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.915	479	534	IPR017930	Myb domain
SMART	SM00717	1.1E-12	483	532	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-15	485	534	IPR009057	Homeodomain-like
CDD	cd00167	2.45E-10	486	530	No hit	No description
Pfam	PF13921	1.6E-11	487	548	No hit	No description
PROSITE profile	PS50090	8.595	532	597	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.1E-13	535	587	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-8	536	599	IPR001005	SANT/Myb domain
CDD	cd00167	1.22E-5	539	597	No hit	No description
SuperFamily	SSF46689	1.36E-24	577	649	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-20	588	645	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.756	598	652	IPR017930	Myb domain
SMART	SM00717	4.1E-14	602	650	IPR001005	SANT/Myb domain
CDD	cd00167	3.96E-12	605	648	No hit	No description
Pfam	PF00249	2.4E-14	605	646	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1059 aa Download sequence Send to blast
MAFDDDEDFS GSDSDDGFKE DMEALKKACL LAGKETDDLQ PSCSTGDIGG GHVTGSDDVT 60 PSGTDADDVD DDIELVRSIQ ERFALSTELR EPLTLKPLCS LPPPGSEGDD GDDDFETLRA 120 IQRRFAAYDD DSGKGRKESP LDNFEQVGVT NITSEKESSN NFFVERTNAG EGFPACVDGT 180 TQISDGCSNE IASSQNLIEW HDSGAENTAV SVNSFCFPKS AQAFVEAIKK NRSCQKIIRD 240 KMMQIEARIE ELKKLKERVK ILKGFQIASR KRMGRALSQK RDARVQLISL PKQKCSSKGK 300 KLSAMHYGPP ENSHVASVRE ALTHFAVSLS RKEWSKEERE NLAKGVKQQF QEMLLQRSVD 360 LLSNEDGRSG ESGDLDGLIA SIRDVVITPE TMRLFLPKVN WDQVASMYIP GRSGAECQSR 420 WLNWEDPLIK HEEWAILEEK ALLHAVQRNE MSNWVDISAS LGVCRTPFQC LSHYQRSLNA 480 SILRREWTEE EDIKLCAAVE TFGESNWQLV ASVIEGRTGP QCSNRWIKSL HPTRKRCGKW 540 SADEDKRLKV AVMLFHPKSW RNIGQSVPCR APIWKKITQY VPGRTHVQCR ERWVNSLDPS 600 LNLDKWTEEE DLKLKSAIDE HGYSWSKVAA CVPPRTDNQC RRRWKVLFPD EVPMLQEAKK 660 IRREAFISNF VDREEERPAL RPNDIVPTHK LSYRAGCETA SANKKRKLRP RAARDDSAPR 720 CDALCELERR HLEESEGPES SDLLNNSSLS SRDQEIERIS DGEEAFEQGY HDSTKNKRPS 780 KLHPRRTKKL APNDMVPEAS ASSKVESTTA VNNICKNRRR TSSLVKKKKT IASQESSSSL 840 PNLSSSMTVV EEVDSHVQDS GKTMNVMDKC HSTSGYDDSC VNSEGPPLSC PHLDKGTADL 900 DVGENRVWEN ASTIGPQEAS LYFQKNAVVC TDENARQLKA SGCHKLNKCN QLKSDGRFSV 960 NNLRETADDC MTLASFILKS RAKRRSLSSA KVAKLRPDIA QSTGVAEDHS SRSCISGGHD 1020 GVEKTMTQEC TSSNQISGAE VADDMPLSLV MGRVKRRQR

Sequence ? help Back to Top

Protein Sequence Length: 1059 aa Download sequence Send to blast

MAFDDDEDFS GSDSDDGFKE DMEALKKACL LAGKETDDLQ PSCSTGDIGG GHVTGSDDVT  60
PSGTDADDVD DDIELVRSIQ ERFALSTELR EPLTLKPLCS LPPPGSEGDD GDDDFETLRA  120
IQRRFAAYDD DSGKGRKESP LDNFEQVGVT NITSEKESSN NFFVERTNAG EGFPACVDGT  180
TQISDGCSNE IASSQNLIEW HDSGAENTAV SVNSFCFPKS AQAFVEAIKK NRSCQKIIRD  240
KMMQIEARIE ELKKLKERVK ILKGFQIASR KRMGRALSQK RDARVQLISL PKQKCSSKGK  300
KLSAMHYGPP ENSHVASVRE ALTHFAVSLS RKEWSKEERE NLAKGVKQQF QEMLLQRSVD  360
LLSNEDGRSG ESGDLDGLIA SIRDVVITPE TMRLFLPKVN WDQVASMYIP GRSGAECQSR  420
WLNWEDPLIK HEEWAILEEK ALLHAVQRNE MSNWVDISAS LGVCRTPFQC LSHYQRSLNA  480
SILRREWTEE EDIKLCAAVE TFGESNWQLV ASVIEGRTGP QCSNRWIKSL HPTRKRCGKW  540
SADEDKRLKV AVMLFHPKSW RNIGQSVPCR APIWKKITQY VPGRTHVQCR ERWVNSLDPS  600
LNLDKWTEEE DLKLKSAIDE HGYSWSKVAA CVPPRTDNQC RRRWKVLFPD EVPMLQEAKK  660
IRREAFISNF VDREEERPAL RPNDIVPTHK LSYRAGCETA SANKKRKLRP RAARDDSAPR  720
CDALCELERR HLEESEGPES SDLLNNSSLS SRDQEIERIS DGEEAFEQGY HDSTKNKRPS  780
KLHPRRTKKL APNDMVPEAS ASSKVESTTA VNNICKNRRR TSSLVKKKKT IASQESSSSL  840
PNLSSSMTVV EEVDSHVQDS GKTMNVMDKC HSTSGYDDSC VNSEGPPLSC PHLDKGTADL  900
DVGENRVWEN ASTIGPQEAS LYFQKNAVVC TDENARQLKA SGCHKLNKCN QLKSDGRFSV  960
NNLRETADDC MTLASFILKS RAKRRSLSSA KVAKLRPDIA QSTGVAEDHS SRSCISGGHD  1020
GVEKTMTQEC TSSNQISGAE VADDMPLSLV MGRVKRRQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-25	434	644	6	155	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-25	434	644	6	155	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238974	1e-111	AC238974.1 Solanum tuberosum clone RHPOTKEY152M21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016461325.1	0.0	PREDICTED: uncharacterized protein LOC107784678 isoform X2
TrEMBL	A0A1S3ZA44	0.0	A0A1S3ZA44_TOBAC; uncharacterized protein LOC107784678 isoform X2
STRING	XP_009600159.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-168	myb domain protein 4r1