PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016461324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 1061aa MW: 118670 Da PI: 6.7248 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1e-07 | 333 | 426 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkqcksrwqky 47 r+ W++eE e l+++vkq + +W+ +a++ gR++ +c+srw+++ XP_016461324.1 333 RKEWSKEERENLAKGVKQQFQEmllqrsvdllsnedgrsgesgdldgliasirdvvitpetmrlflpkvNWDQVASMYIPGRSGAECQSRWLNW 426 789****************999******************************************************9888************98 PP | |||||||
2 | Myb_DNA-binding | 41.4 | 3.4e-13 | 486 | 530 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r WT+eEd +l av+ +G +W ++a+ + gRt+ qc +rw k XP_016461324.1 486 RREWTEEEDIKLCAAVETFGESNWQLVASVIE-GRTGPQCSNRWIK 530 678*****************************.***********87 PP | |||||||
3 | Myb_DNA-binding | 37.3 | 6.4e-12 | 540 | 597 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 g+W+++Ed++l+ av ++ ++ Wk+I ++++ gRt qc++rw + XP_016461324.1 540 GKWSADEDKRLKVAVMLFHPKswrnigqsvpcrapIWKKITQYVP-GRTHVQCRERWVN 597 89*****************99************************.***********87 PP | |||||||
4 | Myb_DNA-binding | 48 | 2.8e-15 | 607 | 649 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eEd++l+ a+ ++G W+++a++++ Rt++qc+ rw + XP_016461324.1 607 KWTEEEDLKLKSAIDEHGYS-WSKVAACVP-PRTDNQCRRRWKVL 649 8*****************99.*********.9**********865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.992 | 328 | 427 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-10 | 331 | 354 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-6 | 332 | 429 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00403 | 390 | 426 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-10 | 402 | 436 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-12 | 409 | 477 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.98 | 428 | 480 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.022 | 432 | 482 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-8 | 437 | 486 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.04E-18 | 466 | 537 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.915 | 481 | 536 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 485 | 534 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 487 | 536 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.41E-10 | 488 | 532 | No hit | No description |
Pfam | PF13921 | 1.6E-11 | 489 | 550 | No hit | No description |
PROSITE profile | PS50090 | 8.595 | 534 | 599 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-13 | 537 | 589 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-8 | 538 | 601 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-5 | 541 | 599 | No hit | No description |
SuperFamily | SSF46689 | 1.36E-24 | 579 | 651 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 590 | 647 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.756 | 600 | 654 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-14 | 604 | 652 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.93E-12 | 607 | 650 | No hit | No description |
Pfam | PF00249 | 2.4E-14 | 607 | 648 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1061 aa Download sequence Send to blast |
MAFDDDEDFS GSDSDDGFKE DMEALKKACL LAGKETDDLQ PSCSTGDIGG GHVTGSDDVT 60 PSGTDADDVD DDIELVRSIQ ERFALSTELR EPLTLKPLCS LPPPGSEGDD GDDDFETLRA 120 IQRRFAAYDD DSGKGRKESP LDNFEQVGVT NITSEKESSN NFFVERTNAG EGFPACVDGT 180 TQISDGCSNE IASSQNLIEW HDSGAENTAV SVNSFCFPKS AQAFVEAIKK NRSCQKIIRD 240 KMMQIEARIE ELKKLKERVK ILKGFQIASR KRMGRALSQK RDARVQLISL PKQKCSSKLQ 300 GKKLSAMHYG PPENSHVASV REALTHFAVS LSRKEWSKEE RENLAKGVKQ QFQEMLLQRS 360 VDLLSNEDGR SGESGDLDGL IASIRDVVIT PETMRLFLPK VNWDQVASMY IPGRSGAECQ 420 SRWLNWEDPL IKHEEWAILE EKALLHAVQR NEMSNWVDIS ASLGVCRTPF QCLSHYQRSL 480 NASILRREWT EEEDIKLCAA VETFGESNWQ LVASVIEGRT GPQCSNRWIK SLHPTRKRCG 540 KWSADEDKRL KVAVMLFHPK SWRNIGQSVP CRAPIWKKIT QYVPGRTHVQ CRERWVNSLD 600 PSLNLDKWTE EEDLKLKSAI DEHGYSWSKV AACVPPRTDN QCRRRWKVLF PDEVPMLQEA 660 KKIRREAFIS NFVDREEERP ALRPNDIVPT HKLSYRAGCE TASANKKRKL RPRAARDDSA 720 PRCDALCELE RRHLEESEGP ESSDLLNNSS LSSRDQEIER ISDGEEAFEQ GYHDSTKNKR 780 PSKLHPRRTK KLAPNDMVPE ASASSKVEST TAVNNICKNR RRTSSLVKKK KTIASQESSS 840 SLPNLSSSMT VVEEVDSHVQ DSGKTMNVMD KCHSTSGYDD SCVNSEGPPL SCPHLDKGTA 900 DLDVGENRVW ENASTIGPQE ASLYFQKNAV VCTDENARQL KASGCHKLNK CNQLKSDGRF 960 SVNNLRETAD DCMTLASFIL KSRAKRRSLS SAKVAKLRPD IAQSTGVAED HSSRSCISGG 1020 HDGVEKTMTQ ECTSSNQISG AEVADDMPLS LVMGRVKRRQ R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-25 | 436 | 646 | 9 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-25 | 436 | 646 | 9 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238974 | 1e-111 | AC238974.1 Solanum tuberosum clone RHPOTKEY152M21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016461324.1 | 0.0 | PREDICTED: uncharacterized protein LOC107784678 isoform X1 | ||||
TrEMBL | A0A1S3ZAE1 | 0.0 | A0A1S3ZAE1_TOBAC; uncharacterized protein LOC107784678 isoform X1 | ||||
STRING | XP_009600159.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10876 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-169 | myb domain protein 4r1 |