PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016461257.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27565.4 Da PI: 10.1317 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.8e-15 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++ ++G +W++ ++ g+ Rt+k+c++rw +yl XP_016461257.1 19 KGAWSPEEDQKLKSYIMRYGIWNWSRMPKFAGLSRTGKSCRLRWINYL 66 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.9e-14 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g++T eE e ++ ++lG++ W++Ia++++ gRt++++k++++++l XP_016461257.1 72 KGPFTMEERETVIKMYQELGSR-WSAIAAKLP-GRTDNDVKNFFYTHL 117 79********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.668 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.21E-28 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-23 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-9 | 21 | 66 | No hit | No description |
SMART | SM00717 | 2.4E-13 | 71 | 119 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.873 | 71 | 121 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.5E-13 | 72 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.22E-9 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-24 | 74 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPSVPQQQQK STSMEEVKKG AWSPEEDQKL KSYIMRYGIW NWSRMPKFAG LSRTGKSCRL 60 RWINYLNPDV KKGPFTMEER ETVIKMYQEL GSRWSAIAAK LPGRTDNDVK NFFYTHLKKH 120 MGMQKDALLK SNVRRKRVEK TKKAQERPVL FVAINNLTIG TSSNDSLISP DISSSGSSSS 180 SINTFGKNQK MNIDMENTVI LESNPETHQS DHSLSIESLD LYDTSSFWFH LLNDAHRLIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 16 | 119 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790938.1 | 1e-180 | PREDICTED: transcription factor WER-like | ||||
Refseq | XP_016461257.1 | 1e-180 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A1S3ZAK3 | 1e-179 | A0A1S3ZAK3_TOBAC; transcription factor WER-like | ||||
TrEMBL | A0A1U7XJ84 | 1e-179 | A0A1U7XJ84_NICSY; transcription factor WER-like | ||||
STRING | XP_009790938.1 | 1e-180 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 9e-47 | myb domain protein 14 |