PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461257.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 240aa    MW: 27565.4 Da    PI: 10.1317
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+ ++ ++G  +W++ ++  g+ Rt+k+c++rw +yl
   XP_016461257.1 19 KGAWSPEEDQKLKSYIMRYGIWNWSRMPKFAGLSRTGKSCRLRWINYL 66
                     79******************99************************97 PP

2Myb_DNA-binding45.41.9e-1472117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g++T eE e  ++  ++lG++ W++Ia++++ gRt++++k++++++l
   XP_016461257.1  72 KGPFTMEERETVIKMYQELGSR-WSAIAAKLP-GRTDNDVKNFFYTHL 117
                      79********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.6681470IPR017930Myb domain
SuperFamilySSF466891.21E-2817113IPR009057Homeodomain-like
SMARTSM007172.9E-121868IPR001005SANT/Myb domain
PfamPF002491.1E-131966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-232073IPR009057Homeodomain-like
CDDcd001671.42E-92166No hitNo description
SMARTSM007172.4E-1371119IPR001005SANT/Myb domain
PROSITE profilePS5129414.87371121IPR017930Myb domain
PfamPF002495.5E-1372117IPR001005SANT/Myb domain
CDDcd001678.22E-974117No hitNo description
Gene3DG3DSA:1.10.10.607.9E-2474121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPSVPQQQQK STSMEEVKKG AWSPEEDQKL KSYIMRYGIW NWSRMPKFAG LSRTGKSCRL  60
RWINYLNPDV KKGPFTMEER ETVIKMYQEL GSRWSAIAAK LPGRTDNDVK NFFYTHLKKH  120
MGMQKDALLK SNVRRKRVEK TKKAQERPVL FVAINNLTIG TSSNDSLISP DISSSGSSSS  180
SINTFGKNQK MNIDMENTVI LESNPETHQS DHSLSIESLD LYDTSSFWFH LLNDAHRLIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241611924126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790938.11e-180PREDICTED: transcription factor WER-like
RefseqXP_016461257.11e-180PREDICTED: transcription factor WER-like
TrEMBLA0A1S3ZAK31e-179A0A1S3ZAK3_TOBAC; transcription factor WER-like
TrEMBLA0A1U7XJ841e-179A0A1U7XJ84_NICSY; transcription factor WER-like
STRINGXP_009790938.11e-180(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-47myb domain protein 14