PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461230.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 709aa    MW: 75881.9 Da    PI: 6.7875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16441487455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  XP_016461230.1 441 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 487
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.38E-17433491No hitNo description
Gene3DG3DSA:4.10.280.102.8E-20434495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-20434497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13441487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MPLSEFLKMA RGKLESGQQR ISSTTHLSSF PENDLVELVW ENGQIMMQGQ SSSAKKNPIP  60
NKLPSNVSKI GKFGVMDSML NDMPLSVPTD ELDLIQEDEG VPWLGYAADD SLQQDYCSQF  120
LPEISGLTAN EPSRQSEFGL INKRGSSDKM IRDSHSVPIH NAGNFEQRKV SPSSKFSLLC  180
SLAPQKGHLE SGVSDVFSSK ISNTPVSVYG DSGQNQAAAG EVKSIKIQKQ NMSGSCSSLP  240
NFSHFSRPAT FVKAAKLQNI TGGPNVSDSY TVEAKGSKEG ENVTNSHNNV NAAAVEDYLS  300
SKKENDLHYP TNVVPSQLES RASGDSFHDR SCRVEQSDNV FRDRSSNSAN TPGQFTGAKA  360
TTDTADGERN VEHGVVCSSV CSGSSAERGS SDQPHNLKRK TRDNEDSGCP SEDVEEESVG  420
IKKTCPTRGG TGSKRSRAAE VHNLSERRRR DRINEKMRAL QELIPNCNKA DKASMLDEAI  480
EYLKTLQLQV QIMSMGAGFC VPPMMFPAGV QHMHAAQMPH FSPMGLGMGM GMGMGYGMGM  540
LDMNGRSSGC PVFPIPSVQG SHFPSPPIPA TAAYPGIAVS SRHAFAHPGQ GLPMPIPRPS  600
LAPLAGQSST GAAVPLNAAR VGVSVDRPSV PPILDSKNPV HKKNSRIVRD AESSLPINQT  660
CSQVQAANEI LDKSALVQKN DQLLDVTGSA ANNLTNQTDV PGSEAGSSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445450ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589214.10.0PREDICTED: transcription factor PIF3-like
RefseqXP_016461230.10.0PREDICTED: transcription factor PIF3-like
TrEMBLA0A1S3Z9U70.0A0A1S3Z9U7_TOBAC; transcription factor PIF3-like
STRINGXP_009589214.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-48phytochrome interacting factor 3