PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016461160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 308aa MW: 34123.4 Da PI: 9.9551 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.5e-11 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+ l +v ++G+g W+tI + R+ ++k++w++ XP_016461160.1 5 KLKWTPEEEVALRAGVIKYGPGKWRTILKDPEfsgvlYLRSNVDLKDKWRNM 56 689**********************************88***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.648 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.28E-15 | 2 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 8.83E-18 | 7 | 57 | No hit | No description |
SMART | SM00526 | 6.2E-11 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 2.78E-14 | 119 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 20.162 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 5.5E-13 | 123 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.3E-6 | 125 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MGAPKLKWTP EEEVALRAGV IKYGPGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMTVMA 60 NGWGSREKAK LALKRMIQAP MQDESSVAVT SAAECDAEIP EARPATTSRG SPQLGGSRRS 120 ILRLDNLIME TISNLNEPGG SYQATISTYI EDQYWETPNF KRILLAKLKY LTATGKLIKM 180 KRKYKVAPKL TFSNRRRNLP LPLLDSSQRI CSKVDQDDIN MLTRSQIDLD LEKMRNMSPQ 240 EAAAAAAQAV AEADTAIADA AEAARKAEAA AAEAEAAQAF AEAAMKTLQE RSIPRMLVNM 300 VKKFVGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016461160.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Swissprot | Q8VWK4 | 2e-89 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1S3Z9M8 | 0.0 | A0A1S3Z9M8_TOBAC; telomere repeat-binding factor 1-like isoform X1 | ||||
STRING | XP_009598548.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2864 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-87 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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