PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461121.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 563aa    MW: 62659.7 Da    PI: 4.7834
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.93.4e-21222270554
         G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     +Wt eLH++F+eav+qL G+ +  Pk+ilelm+v+gLt+ +v+SHLQk R
  XP_016461121.1 222 EWTLELHAKFLEAVAQL-GEGRCYPKEILELMDVPGLTRMQVASHLQKCR 270
                     7****************.9*****************************98 PP
2Response_reg32.25.4e-12131171106
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     v++vd ++     +  +le+ +y +v+++  +e a+++l + +  +D++++    p++   +ll +  + +  +  i+v + +++ +a++al++G
  XP_016461121.1  13 VMLVDHDQETIYEMVDLLESNKY-KVTTVGAAEMAMNMLSKGKerYDVMIINAYSPDLLSTRLLGQAVALD--IISIFVCDDNNPLLAKKALDVG 104
                     89**99999999***********.***************777667************98888887776655..88899999999*********** PP

                     ESEEEESS--HHH CS
    Response_reg  94 akdflsKpfdpee 106
                     a  +l Kp ++e 
  XP_016461121.1 105 AYLYLKKPLQEEM 117
                     ********77654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-1210134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.5E-1210148No hitNo description
SMARTSM004480.002911121IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.92312126IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.4E-613116IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.99E-814126No hitNo description
PROSITE profilePS5129411.525212274IPR017930Myb domain
SuperFamilySSF466892.15E-14217270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-20218271IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-18221271IPR006447Myb domain, plants
PfamPF002492.2E-6222269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAPYYGMINE VRVMLVDHDQ ETIYEMVDLL ESNKYKVTTV GAAEMAMNML SKGKERYDVM  60
IINAYSPDLL STRLLGQAVA LDIISIFVCD DNNPLLAKKA LDVGAYLYLK KPLQEEMVKY  120
LWQFVLKEKL QREKVKKVLE NGEDMIINIG DDDETGENVG DEQGETSMGN DEEQNNNHEV  180
VNSESNGKYK LRKKRGRKST KEVNQGDSHS SGKSVKRKVC TEWTLELHAK FLEAVAQLGE  240
GRCYPKEILE LMDVPGLTRM QVASHLQKCR NDNWRAPEKR KSSRNSSGQG SSSGSQQRSG  300
HRKFGSMPRI QTNIVTNLQQ QQLDQEINQR SPPEYQLNSS NIIARGESST QQEQVYRPQL  360
PYVEPQYLSI GSPFNNPNFT QNNAGGFVQQ QQQHGPFVGM MGQGQGPIIG GTNYMPGFTI  420
NNGPDHNAQN GYNMNVNAAH LGYSSGPMIS DMSGNVTMNG LGFAAAANPN FQQQYGQPNM  480
TESSNFVVPS NVSDSEGTDS NEGQNCDQYF DFNDVDYLFQ NLGPPTSNLP NEQGTEFGPV  540
YSDDQVKPSV PFPGIANFPD DLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461121.10.0PREDICTED: two-component response regulator ORR21-like
TrEMBLA0A1S3Z9M60.0A0A1S3Z9M6_TOBAC; two-component response regulator ORR21-like
STRINGXP_009798262.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-30response regulator 2