PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461010.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 357aa    MW: 39302.8 Da    PI: 7.3926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20189238255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  XP_016461010.1 189 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 238
                     59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.26E-34188248No hitNo description
SMARTSM003809.3E-38189252IPR001471AP2/ERF domain
PROSITE profilePS5103223.143189246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32189247IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23189247IPR016177DNA-binding domain
PfamPF008473.6E-14190238IPR001471AP2/ERF domain
PRINTSPR003673.4E-11190201IPR001471AP2/ERF domain
PRINTSPR003673.4E-11212228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAATTDFWTS TLLDLNSSNS LQGGGELMEA LAPFIKSASP INYPSISPSP FSSFSFPSTN  60
SQSFPITTTT SSTSTSYPYD SFSLTSQPNM SYDGCSTSTT INPTFSQGFL GFEMEQPGSI  120
GLDQLTQAQV HQIQAQIYLQ NNHHQQQIMS SAATFQDSLT HQHNHHASLL SPKPVSMKQS  180
GWPPKPPKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAYKLRGDF  240
ARLNFPHLRH SGSLIGGEFG EYKPLHSSVD AKLQAICQDL AQGKSIDTKK KRKVSSKKEE  300
RKPAEVGSES DGSGSCSGFG SGGSSPISDL TFTEFADEDS IWDMCSEKFM LQKYPSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22188246160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-22188252469ATERF1
3gcc_A7e-22188252469ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288293KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461010.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E43e-81RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1S3Z9790.0A0A1S3Z979_TOBAC; ethylene-responsive transcription factor RAP2-4-like
STRINGXP_009797394.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-59related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]