PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016460996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 273aa MW: 30694.5 Da PI: 6.161 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.6e-20 | 69 | 118 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a+++a++k++g XP_016460996.1 69 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAIAYDEAALKFKG 118 7********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.5E-33 | 68 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-14 | 69 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.908 | 69 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 69 | 127 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-38 | 69 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.13E-22 | 69 | 127 | No hit | No description |
PRINTS | PR00367 | 1.8E-11 | 70 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 92 | 108 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MSAMVSVLSQ VIGSTTTTTT NNNNNTNISS VSSSVNGINP LTLPQSTGAN LQNQSQSVQE 60 QGNQQRKRHY RGVRQRPWGK WAAEIRDPKK AARVWLGTFD TAEAAAIAYD EAALKFKGNK 120 AKLNFPERVQ GKTEFSFLTN TTQDLGIVGQ QFPATSSINS NLPYFQPNYL SQEHFPNVHH 180 YAQLLRDGNN FEMNFGVSPN FYQPISEGFV SESLPNTSLE LQQGTFHEQE QEVSYNQQQE 240 EDFLRFPFHY GNSNSSTGPN TGESNWEDFE HRK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-27 | 68 | 129 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016460996.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF113-like | ||||
TrEMBL | A0A1S3Z9A4 | 0.0 | A0A1S3Z9A4_TOBAC; ethylene-responsive transcription factor ERF113-like | ||||
STRING | XP_009804195.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13330.1 | 9e-34 | related to AP2 6l |