PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016460963.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 1245aa MW: 136280 Da PI: 4.5901

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016460963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	411	432	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +C+ +F++k++L +H+ +H XP_016460963.1 411 HCDKCNVTFNDKDDLLQHQLSH 432 5******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.287	282	355	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	6.3E-5	290	335	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	8.5E-8	290	334	IPR016177	DNA-binding domain
SMART	SM00355	0.0064	410	432	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.346	410	437	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.46E-5	411	476	No hit	No description
PROSITE pattern	PS00028	0	412	432	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.1	454	476	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.203	454	481	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	456	476	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1245 aa Download sequence Send to blast
MASVTVDSSS VTVTDGPLHA ESIPTVDLRL LSQSELYSLS LCTPSAFNPR RDDDVIVPKI 60 DRSVFNESAG SRKQTYSRLR LAPASSSSSS ALRSRTPHLR NSLHNPSSFN NDPENSQIVS 120 LLKQLFGSGT KTNPNPSDLI HIRVDYSDSL SVPLPLTVRV PESSNVGSIG QKRKRGRPRK 180 NENENEKVGV GGGGGGVDKG TDVAIKDIVV YQNVDDNRDR DDKEMLNKDG EPVDLAVLGT 240 LEDPFGEELR RRTEGLGSSE ELLRFLGRLN GQWGSTRKKR RIVDAGEFGN VLPKGWKLLL 300 SIKRKEGRVW LHCRRYISPS GRQFETCKEV SSYLLFLHGE RNENLPTYAK SSGTVEITNT 360 CALVSTSDLQ DGSNNEGPLF HNSSPAVDHG ELQVLLNFGE LSEVQVGDLL HCDKCNVTFN 420 DKDDLLQHQL SHRRRRSRNG QSITDGVIIK DGKFECQFCH KTFEERHRYN GHVGAHVKNQ 480 VKTADGSVSV NAGEFVEPVA SSGAMLRESM MLDSVVSLRN LSEIADVSAD YGRKFAPPGK 540 IQEDDHMEID DKLEGLSEAL NTAPNKTNMC LSSEAITCNN MGSIYCETPC DSLIADVVAE 600 GTNKGCHNQE GNSESCSPIS LNEQTCVNTS KVIDCSTIEE PEQEGLLCSN GIVDSCGVSV 660 EDGKFSPAVE ESKVESDRFV DNESTTALCS NVSVLDENSL TNAKQVPCTE DHSGKNIDVL 720 NRVPFWAETS KENRGLSSTG TPSCDEEGST VDYVKRVFPG CIGEQKPSSM MCNIENDECG 780 SLVDSNDNKL IMKEDSCSFV PHPDKHVNTA EKDVSDGSAC FLEEPEQQKV DKNGLFSSAC 840 DKNSEVEAQL LNDSKTTTDE PKVSELQGVS SNITGFPCNN HAVQKADTSD IEKEKSLAFC 900 SLFPAMNLRA PCAEDHDTKV YRSTIEVNDQ QRAANTLFSS TNVPEASTKE NTMNRSYNNP 960 LNGSKFDGLE NSRHHDLNVV FGNSHVDLDA NLNCTTFQLG MEETYGVQAN LLGRLESDKQ 1020 GEVGIDLSDS AFKGKTGDFE SNFDTVFHSQ LWDEQKVDEV GDSGKKIITG FGCGGAKPNE 1080 DVMAGSIWRT GVENVMQGDS ADNSTSVVQS SNCFQTYDVL SDKVQSLFGE NEKYDGNTGF 1140 DGLRSDRTGP VEYSFMSTQS LNSLQEEPRA LPYDVDIEQG FNSSFWLGKD DLMPNLAGRN 1200 QVMLVCVWCR NEFYQEPNQL GAEAGSIGSM CPTCSGRISG QFSFL

Sequence ? help Back to Top

Protein Sequence Length: 1245 aa Download sequence Send to blast

MASVTVDSSS VTVTDGPLHA ESIPTVDLRL LSQSELYSLS LCTPSAFNPR RDDDVIVPKI  60
DRSVFNESAG SRKQTYSRLR LAPASSSSSS ALRSRTPHLR NSLHNPSSFN NDPENSQIVS  120
LLKQLFGSGT KTNPNPSDLI HIRVDYSDSL SVPLPLTVRV PESSNVGSIG QKRKRGRPRK  180
NENENEKVGV GGGGGGVDKG TDVAIKDIVV YQNVDDNRDR DDKEMLNKDG EPVDLAVLGT  240
LEDPFGEELR RRTEGLGSSE ELLRFLGRLN GQWGSTRKKR RIVDAGEFGN VLPKGWKLLL  300
SIKRKEGRVW LHCRRYISPS GRQFETCKEV SSYLLFLHGE RNENLPTYAK SSGTVEITNT  360
CALVSTSDLQ DGSNNEGPLF HNSSPAVDHG ELQVLLNFGE LSEVQVGDLL HCDKCNVTFN  420
DKDDLLQHQL SHRRRRSRNG QSITDGVIIK DGKFECQFCH KTFEERHRYN GHVGAHVKNQ  480
VKTADGSVSV NAGEFVEPVA SSGAMLRESM MLDSVVSLRN LSEIADVSAD YGRKFAPPGK  540
IQEDDHMEID DKLEGLSEAL NTAPNKTNMC LSSEAITCNN MGSIYCETPC DSLIADVVAE  600
GTNKGCHNQE GNSESCSPIS LNEQTCVNTS KVIDCSTIEE PEQEGLLCSN GIVDSCGVSV  660
EDGKFSPAVE ESKVESDRFV DNESTTALCS NVSVLDENSL TNAKQVPCTE DHSGKNIDVL  720
NRVPFWAETS KENRGLSSTG TPSCDEEGST VDYVKRVFPG CIGEQKPSSM MCNIENDECG  780
SLVDSNDNKL IMKEDSCSFV PHPDKHVNTA EKDVSDGSAC FLEEPEQQKV DKNGLFSSAC  840
DKNSEVEAQL LNDSKTTTDE PKVSELQGVS SNITGFPCNN HAVQKADTSD IEKEKSLAFC  900
SLFPAMNLRA PCAEDHDTKV YRSTIEVNDQ QRAANTLFSS TNVPEASTKE NTMNRSYNNP  960
LNGSKFDGLE NSRHHDLNVV FGNSHVDLDA NLNCTTFQLG MEETYGVQAN LLGRLESDKQ  1020
GEVGIDLSDS AFKGKTGDFE SNFDTVFHSQ LWDEQKVDEV GDSGKKIITG FGCGGAKPNE  1080
DVMAGSIWRT GVENVMQGDS ADNSTSVVQS SNCFQTYDVL SDKVQSLFGE NEKYDGNTGF  1140
DGLRSDRTGP VEYSFMSTQS LNSLQEEPRA LPYDVDIEQG FNSSFWLGKD DLMPNLAGRN  1200
QVMLVCVWCR NEFYQEPNQL GAEAGSIGSM CPTCSGRISG QFSFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016460963.1	0.0	PREDICTED: uncharacterized protein LOC107784349
TrEMBL	A0A1S3Z9B1	0.0	A0A1S3Z9B1_TOBAC; uncharacterized protein LOC107784349
STRING	XP_009613130.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19