PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016460756.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 284aa MW: 32343.3 Da PI: 7.0619 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 106.3 | 1.7e-33 | 37 | 93 | 3 | 59 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + lkcprC s ntkfCyynny+ sqPr++Ck+C+r+Wt+GG+lrnvP+Gggr++++ XP_016460756.1 37 PEPLKCPRCGSINTKFCYYNNYNKSQPRHYCKGCKRHWTEGGTLRNVPLGGGRKNKR 93 6789***********************************************977665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-22 | 33 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-30 | 39 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.468 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 42 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGLSTKLVSF DDHGLDNLSQ NSLPEPPSIR RQPTPKPEPL KCPRCGSINT KFCYYNNYNK 60 SQPRHYCKGC KRHWTEGGTL RNVPLGGGRK NKRLRPTDPV DHINRMERVT LEMDNQRCPL 120 ISKTVPSSTI RGNITTLDEE KKESDIFYQT LKFPSTSLQF DHTISNFSKR PFNGNYKDIF 180 AGLKLDGNTH FSFSFDTVPC SLSTQTSNVC NEYMGKFDST VEESTITTVM PITSNSDLLS 240 QPWPIPETSN VTENMPSYNW NWNEIDTLST ADLNITWDDL EIKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016460756.1 | 0.0 | PREDICTED: uncharacterized protein LOC107784185 | ||||
TrEMBL | A0A1S3Z8N7 | 0.0 | A0A1S3Z8N7_TOBAC; uncharacterized protein LOC107784185 | ||||
STRING | XP_009624330.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6171 | 20 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38000.1 | 5e-28 | DNA binding with one finger 4.7 |