PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460628.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 518aa    MW: 57810.6 Da    PI: 4.8403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS512.6e-16372449282
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                     ++lL++cA+ v+++d + a++ L+++++++sp+gd+ qRla++f+ +L+arla+++++ y+al+p++ +    +e+l+a++
  XP_016460628.1 372 RTLLISCAQSVAADDRRTANEQLKHIRQHSSPTGDAYQRLASVFADGLEARLAGTGTQQYAALAPKRIT---AAEKLKAYQ 449
                     789************************************************************999988...677777765 PP
2GRAS49.95.9e-16451518136201
            GRAS 136 pegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                     p+gpp+lRiTg++ p++g   +e+le+tg+rLak++e+++vpfe+n+++++++e++++e+L++ +gE+
  XP_016460628.1 451 PGGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCERFHVPFEYNAIATQNWENIKIEDLKLASGET 518
                     689**************9******************************999*************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.628345518IPR005202Transcription factor GRAS
PfamPF035149.1E-14372449IPR005202Transcription factor GRAS
PfamPF035142.0E-13451518IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDPRFNPLPH PVNTFEFEDQ INLSSFEESL NHPLSYTDNY VAFGAPYNTS SPDVGNFAPS  60
SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS FYEALGKSYP  120
PSPYRTSDYV YHQLKSPDSI FWNSSEHSTS SSNTGTNSTD PQWVVDPGEF RLPVEGHPSE  180
YNVQPLVQSN SERSRGSLNN FNNSNAHVDT LVNPNVFTDS ESILQFRRGM EEASKFLPNL  240
SQFVIDLDKY TLPPKMEEVS KEAVVKVEKD EKNHSPNGTK GRKHQYPEDS DHEDERSNKQ  300
SAIYVEEEVE LSEMFDRVLL CTDKGTGCGD VKREMPSEVN MSSDQNGQAH GSNGGKTRAK  360
KQATKNEAVD IRTLLISCAQ SVAADDRRTA NEQLKHIRQH SSPTGDAYQR LASVFADGLE  420
ARLAGTGTQQ YAALAPKRIT AAEKLKAYQI PGGPPKLRIT GIDLPQPGFR PAESLEQTGS  480
RLAKYCERFH VPFEYNAIAT QNWENIKIED LKLASGET
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460628.10.0PREDICTED: scarecrow-like protein 14, partial
SwissprotQ9XE581e-105SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S3Z8A20.0A0A1S3Z8A2_TOBAC; scarecrow-like protein 14
STRINGXP_009764837.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-101SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]