PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016460548.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 334aa MW: 37453.1 Da PI: 7.3716

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016460548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.1e-52	13	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+deel+++yL kkv+g++ + + + evd++k+ePw++p+ + + kewyf+s+rd+kyatg r+nrat sgyWkatgkd+++++ XP_016460548.1 13 LPPGFRFHPRDEELICDYLMKKVAGSESDQQYPlLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKDRAIMR 107 79***********************777665699*********7666789*********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 kg+lvg++ktLvfy+grapkg+ktdWvmhe+rle XP_016460548.1 108 -KGSLVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 141 .999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-61	3	164	IPR003441	NAC domain
PROSITE profile	PS51005	58.378	13	163	IPR003441	NAC domain
Pfam	PF02365	1.7E-26	14	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MSSSSLSMVE SKLPPGFRFH PRDEELICDY LMKKVAGSES DQQYPLLIEV DLNKSEPWEI 60 PEVACVGGKE WYFYSQRDRK YATGLRTNRA TVSGYWKATG KDRAIMRKGS LVGMRKTLVF 120 YQGRAPKGRK TDWVMHEFRL ETTSPHISSL KQEDWVLCRV FHKNKELLAV KQGTGSSIYH 180 EHDTISSSYL PPLMDPYITF DQTQPNNINI NTINMNELYY EQVPCFSIFN PNQTFSSHSH 240 HIPTAGATDA YGGLPADIGT YLNAAATSSS CDNKVIKAVL SHLNIMEGSH NNNNPARNTV 300 NVKAGGSPTS FGEGSSETSF LSEVGLTTMW NNHY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	8	164	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	8	164	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	8	164	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	8	164	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	8	164	15	169	NAC domain-containing protein 19
3swm_B	1e-54	8	164	15	169	NAC domain-containing protein 19
3swm_C	1e-54	8	164	15	169	NAC domain-containing protein 19
3swm_D	1e-54	8	164	15	169	NAC domain-containing protein 19
3swp_A	1e-54	8	164	15	169	NAC domain-containing protein 19
3swp_B	1e-54	8	164	15	169	NAC domain-containing protein 19
3swp_C	1e-54	8	164	15	169	NAC domain-containing protein 19
3swp_D	1e-54	8	164	15	169	NAC domain-containing protein 19
4dul_A	1e-54	8	164	12	166	NAC domain-containing protein 19
4dul_B	1e-54	8	164	12	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC187539	2e-32	AC187539.1 Solanum lycopersicum cv. Heinz 1706, chromosome 7 BAC clone C07HBa0179K09, complete sequence.
GenBank	AC210361	2e-32	AC210361.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0215P04, complete sequence.
GenBank	HG975446	2e-32	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	2e-32	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605813.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like isoform X1
Refseq	XP_016460548.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like isoform X1
Swissprot	Q84TE6	1e-110	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A1S3Z816	0.0	A0A1S3Z816_TOBAC; NAC domain-containing protein 21/22-like isoform X1
STRING	XP_009605813.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-109	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]