PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460367.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 297aa    MW: 32036.8 Da    PI: 4.8726
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68.2e-06447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  XP_016460367.1  4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47
                    7*****999*********************66899999999986 PP

2zf-B_box28.23.8e-095390237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                    +++kC+ ++e    +fC +++ llC++C  ++H    H
  XP_016460367.1 53 SMPKCDICQEAVGYFFCLEDRALLCRKCDIAIHTAnpH 90
                    689********9********************955563 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000212.37E-7347No hitNo description
SMARTSM003362.8E-10447IPR000315B-box-type zinc finger
SMARTSM003362.1E-155299IPR000315B-box-type zinc finger
PROSITE profilePS501199.0015299IPR000315B-box-type zinc finger
PfamPF006431.1E-65389IPR000315B-box-type zinc finger
CDDcd000211.95E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLTGS SSSMPKCDIC  60
QEAVGYFFCL EDRALLCRKC DIAIHTANPH VSAHQRFFLT GVKVGLEPVD PGGASSSGTS  120
QSIQKVSEAE SAPLSKRNAP ISLDAQFNKV LPPQASGLGD FAPSKSAFAG GSAAGSIPQW  180
QFDEFIGLND FNQNYGYMDD GSSRADNGKL GESDSSSILR FEDEELDGDE CLGQVPDTSW  240
AVPQVPSPPT ASGLYWPKTY QNPFDCSMFV PDISYSPSHN LQQRPPSGTS LKRRRQC
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-161HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460367.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM26e-98BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1S3Z8330.0A0A1S3Z833_TOBAC; B-box zinc finger protein 22-like
STRINGXP_009625544.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-91light-regulated zinc finger protein 1