PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016460314.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 358aa MW: 40397.4 Da PI: 6.5622 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.2e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G +W+++++ g+ R++k+c++rw +yl XP_016460314.1 13 RGLWSPEEDEKLIRHITIHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.7e-16 | 66 | 108 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w+ XP_016460314.1 66 RGCFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 108 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.37 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.61E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.282 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.19E-11 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLIRHITI HGHSCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGCFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSA IKKKLIAQGF 120 DPNTHNLLSR NHHQNNKIKS SCKSKTSNHP NSTSVFTIET LSSSKEVGVI SMDIIKASLA 180 ALPLIASTTT ITIPHSQTSW DPLCESSLTS TIYNYMNPVS IPTTTNIENS NLATIEYQNQ 240 STSNNLLSSS SLTPSGFGII NENCMWDVTD FEPQLIRSTN GQEEVQLVQE EGAQVLQLQE 300 NICQEVYKVN HEFNNNGQIS ENVTFDNSNF DFEFVDSALM PCEIFANVNS IDQLAWDC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF477956 | 1e-149 | AF477956.1 Capsicum annuum transcription factor Myb mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016460314.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | A0A1S3Z7I0 | 0.0 | A0A1S3Z7I0_TOBAC; myb-related protein 330-like | ||||
STRING | XP_009781591.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-80 | myb domain protein 67 |