PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460142.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 290aa    MW: 33434 Da    PI: 4.704
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1954106456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++  +q+++Le+ Fe +++++ e++ ++A++lgL+ rqV +WFqNrRa++k
  XP_016460142.1  54 KRRLRVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWK 106
                     4567889*********************************************9 PP
2HD-ZIP_I/II123.59.8e-4053143292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkrrl  +qv++LE+ Fe ++kL+perKv++a+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++y+al+ + +++e+e+e L ++lk
  XP_016460142.1  53 KKRRLRVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWKTKQLERDYNILKANYEALQLNYTKVEQEKEGLINQLK 143
                     9*************************************************************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1949110IPR009057Homeodomain-like
SMARTSM003893.8E-1951112IPR001356Homeobox domain
PROSITE profilePS5007116.55253108IPR001356Homeobox domain
CDDcd000869.81E-1753109No hitNo description
PfamPF000465.5E-1754106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-2059106IPR009057Homeodomain-like
PRINTSPR000311.7E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000311.7E-588104IPR000047Helix-turn-helix motif
PfamPF021831.0E-14108148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKRFSFSDSS GKLLYPPEEK NTENLAYSTD FQAMLDGLED EDGIEESGCV TGKKRRLRVD  60
QVQALEKIFE VDNKLDPERK VKIAQELGLQ PRQVAIWFQN RRARWKTKQL ERDYNILKAN  120
YEALQLNYTK VEQEKEGLIN QLKGLKEKIG EENSTAFQRP QEILELNPRN YEVSNKLNSD  180
FVDSKDGSSD SDSSGVMNEE NYNNTLNYQP LMPKVSSYNA LDHLSLSSST YTQLLDPRAS  240
STSSMRGYNQ QQQQVGKMEE QNGFTTEDSC NIYSVDQAPN LYWYLSDHRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY173061e-148Y17306.1 Lycopersicon esculentum mRNA for homeodomain protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460142.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
RefseqXP_018631361.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1S3Z7G30.0A0A1S3Z7G3_TOBAC; homeobox-leucine zipper protein ATHB-6-like
STRINGPGSC0003DMT4000792301e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129391620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.11e-42homeobox protein 5