PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459921.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 175aa    MW: 19851.3 Da    PI: 7.045
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.59.3e-5436131297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eq+r+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dyveplk yl+k+relege
  XP_016459921.1  36 KEQERLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHNEKRKTVNGDDICWALGSLGFDDYVEPLKRYLHKHRELEGE 130
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     +
  XP_016459921.1 131 R 131
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.8E-5231147IPR009072Histone-fold
SuperFamilySSF471132.55E-3938135IPR009072Histone-fold
PfamPF008081.9E-2741105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.7E-196987No hitNo description
PROSITE patternPS0068507288IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.7E-1988106No hitNo description
PRINTSPR006152.7E-19107125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVDNINILGS KYDRESHKSY NYSISGSSST EDVVIKEQER LLPIANVGRI MKQILPPNAK  60
ISKEAKETMQ ECVSEFISFV TGEASDKCHN EKRKTVNGDD ICWALGSLGF DDYVEPLKRY  120
LHKHRELEGE RVNQNKVGGN NIIEEREREA GLYSSSRLRS ALSPKLQLDH LNRGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4335126192Transcription factor HapC (Eurofung)
4g92_B2e-4335126192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-105HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596719.11e-127PREDICTED: nuclear transcription factor Y subunit B-5-like
RefseqXP_016459921.11e-127PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-59NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1S3Z6A41e-126A0A1S3Z6A4_TOBAC; nuclear transcription factor Y subunit B-5-like
STRINGXP_009596719.11e-127(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-61nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]