PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459799.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 281aa MW: 31389.9 Da PI: 6.669

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459799.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53	4.7e-17	191	226	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt++ Tp++Rrgp g++tLCnaCGl ++ kg XP_016459799.1 191 CVHCGTSSkdTPMMRRGPAGPRTLCNACGLTWANKG 226 *********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	12.212	65	100	IPR010399	Tify domain
SMART	SM00979	1.1E-6	65	100	IPR010399	Tify domain
Pfam	PF06200	4.0E-9	69	99	IPR010399	Tify domain
Pfam	PF06203	3.1E-13	132	174	IPR010402	CCT domain
PROSITE profile	PS51017	12.302	132	174	IPR010402	CCT domain
SMART	SM00401	1.2E-10	185	238	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.75E-12	187	235	No hit	No description
Gene3D	G3DSA:3.30.50.10	9.8E-15	190	231	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	191	218	IPR000679	Zinc finger, GATA-type
CDD	cd00202	2.34E-14	191	231	No hit	No description
Pfam	PF00320	9.6E-15	191	226	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	8.972	191	231	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MNSHIQAMNV DNHFSAAGEE VPADRDKAVD DFPIGYEGEV GGVEVTMHHN YSVYSASDHV 60 AFQNGEANLN QLTLSFRGQV FVFDGVTTHK VQSVFQLLGG FEYSPGMQAV GLSSPNQEDS 120 VDYPLHCADP KRLESLIRFR EKRKRRCYGK KIRYDVRQEV AFRMQRKNGQ FARKGSGEPK 180 PDDNPPEETW CVHCGTSSKD TPMMRRGPAG PRTLCNACGL TWANKGIMRN LYTASYDNTL 240 LTELEDEDHR NHDYGAPPCS LSYQVSSSAS DSSVLAARQR L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-38	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613072.1	0.0	PREDICTED: GATA transcription factor 25-like
Refseq	XP_016459799.1	0.0	PREDICTED: GATA transcription factor 25-like
Swissprot	Q9LRH6	1e-55	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A1S3Z623	0.0	A0A1S3Z623_TOBAC; GATA transcription factor 25-like
STRING	XP_009613072.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14030	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	9e-58	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]