PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459701.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1682aa MW: 189029 Da PI: 4.89

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+ +r+eL++klgLt+rq ++WF+ rR k+k+ XP_016459701.1 24 PKRQMKTPFQLETLERVYAMETYPSEVTRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-17	9	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.5E-16	12	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.066	20	80	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	22	84	IPR001356	Homeobox domain
Pfam	PF00046	4.1E-16	24	78	IPR001356	Homeobox domain
CDD	cd00086	1.40E-13	25	81	No hit	No description
PROSITE profile	PS50827	15.731	510	569	IPR018501	DDT domain
SMART	SM00571	5.4E-20	510	569	IPR018501	DDT domain
Pfam	PF02791	3.2E-16	512	566	IPR018501	DDT domain
Pfam	PF05066	1.2E-12	691	758	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.1E-6	875	918	IPR028942	WHIM1 domain
Pfam	PF15613	8.8E-14	1047	1119	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1682 aa Download sequence Send to blast
MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEV TRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNVT VSPREDLMVA EAASDRGSGS 120 ASRSGSGSGS SRFDNGDGMP TPPIRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE 180 FDELPPGAFG TPIEMAERRD HYRHSYDSKL YGSYDAKQIN VGSALSLSPA LTSGHREPAE 240 PKIVSDKYGQ IAASYLYDSP VDGPSKNLPI MQGNGHFVRE YGVEGQSINV MSQQSRQGRF 300 PSPQQDNEFV PSNEDMLQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKREEQM 360 KKEMERQDRE RRKEEQRLMR EQQRKEERFQ REEKREMERR EKFLQKELLR VERKKQKEEL 420 RKEREAAKQK VAMERAMARR IAKESMELIE DERLELMDLA ASSKGLLSIA SLDYDTLQNL 480 ESFRESLCEF PPKSVQLKRP FSIQPWNASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF 540 LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY 600 LWGFDIRNWQ KHLTPLTWPE VLRQFALSAG FGPPLKKKRE RACLNDSDET KGCEDVVSTL 660 RSGSAAEKAV AIMQEKGFMS QRKSRHRLTP GTVKFAAYHV LALEGDKGLN VLDIAERIQK 720 SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIQ 780 RYANGFLSGQ NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEQCS ILDTCLVNGK 840 SKPSDEVAQQ IGVDVAGIEG SNPSQECSEI DESKAGQPWV QGLTEGEYSD LCVEERLNAL 900 VALIGIANEG NSIRVILEDR LDAANALKKQ MWAEAQLDKR RLKEETINKF TDSSFNAVVE 960 GSQSPLGFPN SKNQGTAPTT LVKDESAVVV DNVQNHFESI SAEKSSVAQE TFMGELAIQP 1020 SGSTAERSRM QLKSFIGHKA EEMYVYRSLP LGQDRRRNRY WLFVASGSSE DPGSGRIFVE 1080 PPHGCWRLID TEEAFDCLLA SLDTRGVRES HLHIMLQKIE GPFKERVRRS YDDIIVQHGN 1140 KCKNESSAAS SSPASGAGAD SPSSTIYGMG SDSWETSSSF KIELGKNEEE RRNAFKRYQS 1200 FQSWMWKECL SSSILCAMRY GKKRCLPLLG ICRHCLDSYP SEEGNCPSCN KMSSKVDMNA 1260 EFPEQAMDSM DNLKIDYNKL AVSNACPLRV RLMKALLSFL EVYVPCEALQ SSWTEDRRRT 1320 WGMKLQNSLS PEDLLQILTQ LEGVIKRDYL SADYETAEEL MGLCALSINA ACESTFPGSV 1380 PQLPWIPQTT GAVALRLLEL DASISYDPQQ KTEAELKNKV DSLPNPSLGY ACMKDLQKVE 1440 PEVDRDGPLR EENWDYLSSM PSSSRSRQVV RGRGGGRPRG RLQKGSASKI SESGRAGVRP 1500 IETLTQVLIK QGETHGQRHV RGRRTVRKRR IEKKIVEEIQ PDYLGDKGSR LTFVVPPRKH 1560 GREEFDMNVE GIEATNDDSN SMEAADSDDC APENTYQFNR SDLMEMSDED QDGFACDGND 1620 DDNDDDDDDD DDDPDNDNDD RYRSHGQNME RYGNMVEDDS DRDGDVNEDQ ESDSSESGDY 1680 SD

Sequence ? help Back to Top

Protein Sequence Length: 1682 aa Download sequence Send to blast

MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEV TRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNVT VSPREDLMVA EAASDRGSGS  120
ASRSGSGSGS SRFDNGDGMP TPPIRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE  180
FDELPPGAFG TPIEMAERRD HYRHSYDSKL YGSYDAKQIN VGSALSLSPA LTSGHREPAE  240
PKIVSDKYGQ IAASYLYDSP VDGPSKNLPI MQGNGHFVRE YGVEGQSINV MSQQSRQGRF  300
PSPQQDNEFV PSNEDMLQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKREEQM  360
KKEMERQDRE RRKEEQRLMR EQQRKEERFQ REEKREMERR EKFLQKELLR VERKKQKEEL  420
RKEREAAKQK VAMERAMARR IAKESMELIE DERLELMDLA ASSKGLLSIA SLDYDTLQNL  480
ESFRESLCEF PPKSVQLKRP FSIQPWNASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF  540
LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY  600
LWGFDIRNWQ KHLTPLTWPE VLRQFALSAG FGPPLKKKRE RACLNDSDET KGCEDVVSTL  660
RSGSAAEKAV AIMQEKGFMS QRKSRHRLTP GTVKFAAYHV LALEGDKGLN VLDIAERIQK  720
SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIQ  780
RYANGFLSGQ NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEQCS ILDTCLVNGK  840
SKPSDEVAQQ IGVDVAGIEG SNPSQECSEI DESKAGQPWV QGLTEGEYSD LCVEERLNAL  900
VALIGIANEG NSIRVILEDR LDAANALKKQ MWAEAQLDKR RLKEETINKF TDSSFNAVVE  960
GSQSPLGFPN SKNQGTAPTT LVKDESAVVV DNVQNHFESI SAEKSSVAQE TFMGELAIQP  1020
SGSTAERSRM QLKSFIGHKA EEMYVYRSLP LGQDRRRNRY WLFVASGSSE DPGSGRIFVE  1080
PPHGCWRLID TEEAFDCLLA SLDTRGVRES HLHIMLQKIE GPFKERVRRS YDDIIVQHGN  1140
KCKNESSAAS SSPASGAGAD SPSSTIYGMG SDSWETSSSF KIELGKNEEE RRNAFKRYQS  1200
FQSWMWKECL SSSILCAMRY GKKRCLPLLG ICRHCLDSYP SEEGNCPSCN KMSSKVDMNA  1260
EFPEQAMDSM DNLKIDYNKL AVSNACPLRV RLMKALLSFL EVYVPCEALQ SSWTEDRRRT  1320
WGMKLQNSLS PEDLLQILTQ LEGVIKRDYL SADYETAEEL MGLCALSINA ACESTFPGSV  1380
PQLPWIPQTT GAVALRLLEL DASISYDPQQ KTEAELKNKV DSLPNPSLGY ACMKDLQKVE  1440
PEVDRDGPLR EENWDYLSSM PSSSRSRQVV RGRGGGRPRG RLQKGSASKI SESGRAGVRP  1500
IETLTQVLIK QGETHGQRHV RGRRTVRKRR IEKKIVEEIQ PDYLGDKGSR LTFVVPPRKH  1560
GREEFDMNVE GIEATNDDSN SMEAADSDDC APENTYQFNR SDLMEMSDED QDGFACDGND  1620
DDNDDDDDDD DDDPDNDNDD RYRSHGQNME RYGNMVEDDS DRDGDVNEDQ ESDSSESGDY  1680
SD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459701.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A1S3Z5N0	0.0	A0A1S3Z5N0_TOBAC; homeobox-DDT domain protein RLT1-like isoform X2
STRING	XP_009781785.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1