PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016459700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 1691aa MW: 189996 Da PI: 4.878 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.5e-18 | 24 | 79 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+ +r+eL++klgLt+rq ++WF+ rR k+k+ XP_016459700.1 24 PKRQMKTPFQLETLERVYAMETYPSEVTRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 9 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-16 | 12 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.066 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 22 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-16 | 24 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.38E-13 | 25 | 81 | No hit | No description |
PROSITE profile | PS50827 | 15.731 | 510 | 569 | IPR018501 | DDT domain |
SMART | SM00571 | 5.4E-20 | 510 | 569 | IPR018501 | DDT domain |
Pfam | PF02791 | 3.2E-16 | 512 | 566 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.2E-12 | 691 | 758 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 2.1E-6 | 875 | 918 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 8.8E-14 | 1047 | 1119 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1691 aa Download sequence Send to blast |
MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEV TRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNVT VSPREDLMVA EAASDRGSGS 120 ASRSGSGSGS SRFDNGDGMP TPPIRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE 180 FDELPPGAFG TPIEMAERRD HYRHSYDSKL YGSYDAKQIN VGSALSLSPA LTSGHREPAE 240 PKIVSDKYGQ IAASYLYDSP VDGPSKNLPI MQGNGHFVRE YGVEGQSINV MSQQSRQGRF 300 PSPQQDNEFV PSNEDMLQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKREEQM 360 KKEMERQDRE RRKEEQRLMR EQQRKEERFQ REEKREMERR EKFLQKELLR VERKKQKEEL 420 RKEREAAKQK VAMERAMARR IAKESMELIE DERLELMDLA ASSKGLLSIA SLDYDTLQNL 480 ESFRESLCEF PPKSVQLKRP FSIQPWNASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF 540 LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY 600 LWGFDIRNWQ KHLTPLTWPE VLRQFALSAG FGPPLKKKRE RACLNDSDET KGCEDVVSTL 660 RSGSAAEKAV AIMQEKGFMS QRKSRHRLTP GTVKFAAYHV LALEGDKGLN VLDIAERIQK 720 SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIQ 780 RYANGFLSGQ NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEQCS ILDTCLVNGK 840 SKPSDEVAQQ IGVDVAGIEG SNPSQECSEI DESKAGQPWV QGLTEGEYSD LCVEERLNAL 900 VALIGIANEG NSIRVILEDR LDAANALKKQ MWAEAQLDKR RLKEETINKF TDSSFNAVVE 960 GSQSPLGFPN SKNQGTAPTT LVKDESAVVV DNVQNHFESI SAEKSSVAQE TFMGELAIQP 1020 SGSTAERSRM QLKSFIGHKA EEMYVYRSLP LGQDRRRNRY WLFVASGSSE DPGSGRIFVE 1080 PPHGCWRLID TEEAFDCLLA SLDTRGVRES HLHIMLQKIE GPFKERVRRS YDDIIVQHGN 1140 KCKNESSAAS SSPASGAGAD SPSSTIYGMG SDSWETSSSF KIELGKNEEE RRNAFKRYQS 1200 FQSWMWKECL SSSILCAMRY GKKRCLPLLG ICRHCLDSYP SEEGNCPSCN KMSSKVDMNA 1260 EFPEQAMDSM DNLKIDYNKL AVSNACPLRV RLMKALLSFL EVYVPCEALQ SSWTEDRRRT 1320 WGMKLQNSLS PEDLLQILTQ LEGVIKRDYL SADYETAEEL MGLCALSINA ACESTFPGSV 1380 PQLPWIPQTT GAVALRLLEL DASISYDPQQ KTEAELKNKV DSLPVELSSP LIQNPSLGYA 1440 CMKDLQKVEP EVDRDGPLRE ENWDYLSSMP SSSRSRQVVR GRGGGRPRGR LQKGSASKIS 1500 ESGRAGVRPI ETLTQVLIKQ GETHGQRHVR GRRTVRKRRI EKKIVEEIQP DYLGDKGSRL 1560 TFVVPPRKHG REEFDMNVEG IEATNDDSNS MEAADSDDCA PENTYQFNRS DLMEMSDEDQ 1620 DGFACDGNDD DNDDDDDDDD DDPDNDNDDR YRSHGQNMER YGNMVEDDSD RDGDVNEDQE 1680 SDSSESGDYS D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016459700.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A1S3Z5E8 | 0.0 | A0A1S3Z5E8_TOBAC; homeobox-DDT domain protein RLT1-like isoform X1 | ||||
STRING | XP_009781785.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |