PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459617.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 411aa MW: 46564.8 Da PI: 9.5516

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.3e-32	224	277	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_016459617.1 224 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 277 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-15	220	277	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	222	277	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.5E-24	224	277	IPR006447	Myb domain, plants
Pfam	PF00249	5.9E-7	225	276	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSTNWKRST NNSTTEGEID LMFWRRALES RNSNISSLSK 60 PDNNNNTSLF ELSLSNPKPS PEFNSGPFHH IQNTPHNFIH SLQQNHLINH QQNHLLQQQN 120 QGLNSELSFL RPIRGIPVYH QNPPPTPTSH YPIFGEQTFD NTRTAATFPI RSSGCCINNT 180 NNKTMSTSSN IPFRSQHHHH HHQAGVMRSR FLSRFPAKRT MRAPRMRWTS SLHARFVHAV 240 ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRVAVPASS GQSEVFDNGS 300 SGDTSEDLMP DIENSRKSDL SDQQARNNMH LQDKDYHGLW SNSSRESWQL HGKLGDYPGN 360 MPSLEKNQHK DMEAKCLSYD RISAEVSSSS ITETSPKKKP NLEFTLGRPS Q

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PSSTNWKRST NNSTTEGEID LMFWRRALES RNSNISSLSK  60
PDNNNNTSLF ELSLSNPKPS PEFNSGPFHH IQNTPHNFIH SLQQNHLINH QQNHLLQQQN  120
QGLNSELSFL RPIRGIPVYH QNPPPTPTSH YPIFGEQTFD NTRTAATFPI RSSGCCINNT  180
NNKTMSTSSN IPFRSQHHHH HHQAGVMRSR FLSRFPAKRT MRAPRMRWTS SLHARFVHAV  240
ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRVAVPASS GQSEVFDNGS  300
SGDTSEDLMP DIENSRKSDL SDQQARNNMH LQDKDYHGLW SNSSRESWQL HGKLGDYPGN  360
MPSLEKNQHK DMEAKCLSYD RISAEVSSSS ITETSPKKKP NLEFTLGRPS Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	225	279	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	225	279	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	225	279	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	225	279	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	225	279	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	225	279	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	225	279	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	225	279	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615776.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X4
Refseq	XP_016459617.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X4
Swissprot	Q9C616	3e-90	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A1S3Z5X7	0.0	A0A1S3Z5X7_TOBAC; probable transcription factor KAN2 isoform X4
STRING	XP_009615772.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-67	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]