PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016459615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 414aa MW: 46934.2 Da PI: 9.707 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.4e-32 | 224 | 277 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_016459615.1 224 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 277 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.74E-15 | 220 | 277 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 222 | 277 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-24 | 224 | 277 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.0E-7 | 225 | 276 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MELFPAQPDL SLQISPPNSK PSSTNWKRST NNSTTEGEID LMFWRRALES RNSNISSLSK 60 PDNNNNTSLF ELSLSNPKPS PEFNSGPFHH IQNTPHNFIH SLQQNHLINH QQNHLLQQQN 120 QGLNSELSFL RPIRGIPVYH QNPPPTPTSH YPIFGEQTFD NTRTAATFPI RSSGCCINNT 180 NNKTMSTSSN IPFRSQHHHH HHQAGVMRSR FLSRFPAKRT MRAPRMRWTS SLHARFVHAV 240 ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRVAVPASS GQSEVFDNGS 300 SGDTSEDLMP DIENSRKSDL SDQQARNNMH LQDKDYHGLW SNSSRESWQL HGKLGDYPGN 360 MPSLEKLQKN QHKDMEAKCL SYDRISAEVS SSSITETSPK KKPNLEFTLG RPSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 225 | 279 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 225 | 279 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 225 | 279 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 225 | 279 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 225 | 279 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 225 | 279 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 225 | 279 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 225 | 279 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009615773.1 | 0.0 | PREDICTED: probable transcription factor KAN2 isoform X2 | ||||
Refseq | XP_016459615.1 | 0.0 | PREDICTED: probable transcription factor KAN2 isoform X2 | ||||
Swissprot | Q9C616 | 2e-89 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A1S3Z561 | 0.0 | A0A1S3Z561_TOBAC; probable transcription factor KAN2 isoform X2 | ||||
STRING | XP_009615772.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-66 | G2-like family protein |
Publications ? help Back to Top | |||
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