PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459594.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 292aa MW: 31219.7 Da PI: 8.9857

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.1e-38	58	116	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++++cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ XP_016459594.1 58 SENIRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 116 57899***************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.1E-32	60	115	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-25	61	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	61	115	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	63	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MIQELFAGNT TLIGGGGGEN ISKQSNTPST SPLSSTSNSS TLTTNIPPPA NASSSSNSEN 60 IRCPRCDSPN TKFCYYNNYN LTQPRHFCKT CRRYWTKGGA LRNVPIGGGC RKNKNTNIST 120 TSAAKSTAAK LKASLPSFLG GLENEISISN PFLFSSPQNH PLISLLRGNH QNLNFNANNC 180 HFPNSVVKEE GKSIGVNSYN QLPNSNGLCS NMWKNGFIAG EVQSTGLQEL YQRLKASTSR 240 CYPDHAPSLL GNTASSSSMI LESAPVAGGE LGFCNPSIST WSDLQTANGA YF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226517	8e-62	AC226517.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J19, complete sequence.
GenBank	AC232774	8e-62	AC232774.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J10, complete sequence.
GenBank	HG975441	8e-62	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	8e-62	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459594.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S3Z5G6	0.0	A0A1S3Z5G6_TOBAC; dof zinc finger protein DOF2.4-like
STRING	XP_009606019.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	6e-33	DOF zinc finger protein 1