PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016459462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 217aa MW: 24615.2 Da PI: 9.6549 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.1 | 8e-28 | 76 | 130 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_016459462.1 76 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNCYELSISNIKSHLQKYRV 130 689***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.66E-15 | 73 | 130 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.9E-25 | 74 | 131 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-21 | 76 | 130 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.9E-8 | 80 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.4E-16 | 163 | 209 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MWQQNKSALT GAKTLRDPYL SMAARGSQVG KDSFKSRIIK PCCVCQLEKK PQSPPNESVC 60 ISSSNVTPER AETTKKRRIT WTQDLHEQFC ECVNRLGGAK KATPKAILKL MNCYELSISN 120 IKSHLQKYRV TCDVTISPKD AVLTEGSPHR SSFPAHGPET YPQILEALKL QISVQQSLYE 180 QLEIQRSLQL RIEEQAKQLR AMFDRQAETN KHFQHSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-15 | 76 | 129 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-15 | 76 | 129 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-15 | 76 | 129 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-15 | 76 | 129 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-15 | 76 | 129 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-15 | 76 | 129 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-15 | 76 | 129 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-15 | 76 | 129 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016459458.1 | 1e-161 | PREDICTED: uncharacterized protein LOC107783015 isoform X2 | ||||
Refseq | XP_016459460.1 | 1e-162 | PREDICTED: myb family transcription factor APL-like isoform X4 | ||||
Refseq | XP_016459461.1 | 1e-162 | PREDICTED: myb family transcription factor APL-like isoform X4 | ||||
Refseq | XP_016459462.1 | 1e-162 | PREDICTED: protein PHR1-LIKE 1-like isoform X5 | ||||
Swissprot | Q0WVU3 | 2e-35 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A1S3Z4Y3 | 1e-160 | A0A1S3Z4Y3_TOBAC; uncharacterized protein LOC107783015 isoform X2 | ||||
TrEMBL | A0A1S3Z4Z5 | 1e-160 | A0A1S3Z4Z5_TOBAC; myb family transcription factor APL-like isoform X4 | ||||
TrEMBL | A0A1S3Z5H7 | 1e-161 | A0A1S3Z5H7_TOBAC; protein PHR1-LIKE 1-like isoform X5 | ||||
STRING | XP_009595777.1 | 1e-158 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 7e-38 | G2-like family protein |