PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459461.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 283aa MW: 32383 Da PI: 9.2312

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.5	1.3e-27	142	196	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_016459461.1 142 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNCYELSISNIKSHLQKYRV 196 689***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.88E-15	139	196	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-24	140	197	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-21	142	196	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	146	195	IPR001005	SANT/Myb domain
Pfam	PF14379	6.8E-16	229	275	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MILSMEFYEL EMYDTASTSN KPLNKYDLAD ENFKSRDTLH SLVQSSFSCR HKPESLAKDL 60 LHHKHRMWQQ NKSALTGAKT LRDPYLSMAA RGSQVGKDSF KSRIIKPCCV CQLEKKPQSP 120 PNESVCISSS NVTPERAETT KKRRITWTQD LHEQFCECVN RLGGAKKATP KAILKLMNCY 180 ELSISNIKSH LQKYRVTCDV TISPKDAVLT EGSPHRSSFP AHGPETYPQI LEALKLQISV 240 QQSLYEQLEI QRSLQLRIEE QAKQLRAMFD RQAETNKHFQ HSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	142	195	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	142	195	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	142	195	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	142	195	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	142	195	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	142	195	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	142	195	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	142	195	2	55	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459460.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X4
Refseq	XP_016459461.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X4
Swissprot	Q0WVU3	7e-35	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A1S3Z4Z5	0.0	A0A1S3Z4Z5_TOBAC; myb family transcription factor APL-like isoform X4
STRING	XP_009595777.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	3e-37	G2-like family protein