PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016459460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 283aa MW: 32383 Da PI: 9.2312 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.5 | 1.3e-27 | 142 | 196 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_016459460.1 142 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNCYELSISNIKSHLQKYRV 196 689***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.88E-15 | 139 | 196 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 140 | 197 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-21 | 142 | 196 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-7 | 146 | 195 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.8E-16 | 229 | 275 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MILSMEFYEL EMYDTASTSN KPLNKYDLAD ENFKSRDTLH SLVQSSFSCR HKPESLAKDL 60 LHHKHRMWQQ NKSALTGAKT LRDPYLSMAA RGSQVGKDSF KSRIIKPCCV CQLEKKPQSP 120 PNESVCISSS NVTPERAETT KKRRITWTQD LHEQFCECVN RLGGAKKATP KAILKLMNCY 180 ELSISNIKSH LQKYRVTCDV TISPKDAVLT EGSPHRSSFP AHGPETYPQI LEALKLQISV 240 QQSLYEQLEI QRSLQLRIEE QAKQLRAMFD RQAETNKHFQ HSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 142 | 195 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 142 | 195 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 142 | 195 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 142 | 195 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 142 | 195 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 142 | 195 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 142 | 195 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 142 | 195 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016459460.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X4 | ||||
Refseq | XP_016459461.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X4 | ||||
Swissprot | Q0WVU3 | 7e-35 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A1S3Z4Z5 | 0.0 | A0A1S3Z4Z5_TOBAC; myb family transcription factor APL-like isoform X4 | ||||
STRING | XP_009595777.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 3e-37 | G2-like family protein |