PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459459.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 299aa MW: 33930.9 Da PI: 9.1613

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.4	1.4e-27	158	212	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_016459459.1 158 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNCYELSISNIKSHLQKYRV 212 689***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.78E-15	155	212	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-24	156	213	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-21	158	212	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	162	211	IPR001005	SANT/Myb domain
Pfam	PF14379	7.4E-16	245	291	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MMPSFLQLIK GVSGGDDSLY GILCKHLESR TSKFSASESS RTFGQLCENS DDHKMPMFSQ 60 ELEICRHKPE SLAKDLLHHK HRMWQQNKSA LTGAKTLRDP YLSMAARGSQ VGKDSFKSRI 120 IKPCCVCQLE KKPQSPPNES VCISSSNVTP ERAETTKKRR ITWTQDLHEQ FCECVNRLGG 180 AKKATPKAIL KLMNCYELSI SNIKSHLQKY RVTCDVTISP KDAVLTEGSP HRSSFPAHGP 240 ETYPQILEAL KLQISVQQSL YEQLEIQRSL QLRIEEQAKQ LRAMFDRQAE TNKHFQHSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	158	211	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459459.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X3
Swissprot	Q0WVU3	3e-34	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A1S3Z535	0.0	A0A1S3Z535_TOBAC; myb family transcription factor APL-like isoform X3
STRING	XP_009595777.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-36	G2-like family protein