PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016459458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 330aa MW: 37438.6 Da PI: 8.9895 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.2 | 1.6e-27 | 189 | 243 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+ L+++++kSHLQkYR+ XP_016459458.1 189 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNCYELSISNIKSHLQKYRV 243 689***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.02E-14 | 186 | 243 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 187 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-21 | 189 | 243 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-7 | 193 | 242 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.6E-16 | 276 | 322 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MMLIKGVSGG DDSLYGILCK HLESRTSKFS ASESSRTFGQ LCENSDDHKM PMFSQELEMY 60 DTASTSNKPL NKYDLADENF KSRDTLHSLV QSSFSCRHKP ESLAKDLLHH KHRMWQQNKS 120 ALTGAKTLRD PYLSMAARGS QVGKDSFKSR IIKPCCVCQL EKKPQSPPNE SVCISSSNVT 180 PERAETTKKR RITWTQDLHE QFCECVNRLG GAKKATPKAI LKLMNCYELS ISNIKSHLQK 240 YRVTCDVTIS PKDAVLTEGS PHRSSFPAHG PETYPQILEA LKLQISVQQS LYEQLEIQRS 300 LQLRIEEQAK QLRAMFDRQA ETNKHFQHSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-14 | 189 | 242 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-14 | 189 | 242 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-14 | 189 | 242 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-14 | 189 | 242 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-14 | 189 | 242 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-14 | 189 | 242 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-14 | 189 | 242 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-14 | 189 | 242 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016459458.1 | 0.0 | PREDICTED: uncharacterized protein LOC107783015 isoform X2 | ||||
TrEMBL | A0A1S3Z4Y3 | 0.0 | A0A1S3Z4Y3_TOBAC; uncharacterized protein LOC107783015 isoform X2 | ||||
STRING | XP_009595777.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-36 | G2-like family protein |