PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459457.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 335aa    MW: 38011.3 Da    PI: 8.9895
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.7e-27194248155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+ Wt++LHe+F e+v++LGG++kAtPk+il+lm+   L+++++kSHLQkYR+
  XP_016459457.1 194 KRRITWTQDLHEQFCECVNRLGGAKKATPKAILKLMNCYELSISNIKSHLQKYRV 248
                     689***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.06E-14191248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-24192249IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-21194248IPR006447Myb domain, plants
PfamPF002492.0E-7198247IPR001005SANT/Myb domain
PfamPF143798.8E-16281327IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMPSFLQLIK GVSGGDDSLY GILCKHLESR TSKFSASESS RTFGQLCENS DDHKMPMFSQ  60
ELEMYDTAST SNKPLNKYDL ADENFKSRDT LHSLVQSSFS CRHKPESLAK DLLHHKHRMW  120
QQNKSALTGA KTLRDPYLSM AARGSQVGKD SFKSRIIKPC CVCQLEKKPQ SPPNESVCIS  180
SSNVTPERAE TTKKRRITWT QDLHEQFCEC VNRLGGAKKA TPKAILKLMN CYELSISNIK  240
SHLQKYRVTC DVTISPKDAV LTEGSPHRSS FPAHGPETYP QILEALKLQI SVQQSLYEQL  300
EIQRSLQLRI EEQAKQLRAM FDRQAETNKH FQHSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-14194247255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-14194247255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-14194247154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-14194247154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-14194247154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-14194247154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-14194247255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-14194247255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-14194247255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-14194247255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-14194247255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-14194247255Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459457.10.0PREDICTED: uncharacterized protein LOC107783015 isoform X1
TrEMBLA0A1S3Z5H20.0A0A1S3Z5H2_TOBAC; uncharacterized protein LOC107783015 isoform X1
STRINGXP_009595777.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2416822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-36G2-like family protein