PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016459422.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 139aa MW: 15633.2 Da PI: 6.8019 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.3 | 1.1e-07 | 82 | 122 | 3 | 43 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 k+ t+ + +++L e F++n+yp++++ e+L k+lgLt q XP_016459422.1 82 KKKTYREGAIKRLYESFKENQYPDRDANEKLGKELGLTAHQ 122 567888999****************************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-5 | 80 | 122 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.9E-5 | 82 | 122 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-7 | 82 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.69E-5 | 82 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MKETYGNESS DSSDEDFEGG PSPKEREIRS AKATMTSPSS TLVDTKYQSG KQKGSRHASD 60 RGLCEKLKIG GMDTSELHSS GKKKTYREGA IKRLYESFKE NQYPDRDANE KLGKELGLTA 120 HQRQFDQEGY VVLIQVIYE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016459422.1 | 1e-98 | PREDICTED: pathogenesis-related homeodomain protein-like isoform X2 | ||||
TrEMBL | A0A1S3Z5D4 | 2e-97 | A0A1S3Z5D4_TOBAC; pathogenesis-related homeodomain protein-like isoform X2 | ||||
STRING | XP_009592467.1 | 1e-66 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009599310.1 | 3e-71 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009602398.1 | 3e-71 | (Nicotiana tomentosiformis) |