PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016459421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 145aa MW: 16391.1 Da PI: 9.0594 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.6 | 2.5e-14 | 82 | 134 | 3 | 55 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 k+ t+ + +++L e F++n+yp++++ e+L k+lgLt qV+ WF N R + XP_016459421.1 82 KKKTYREGAIKRLYESFKENQYPDRDANEKLGKELGLTAHQVSKWFENARHCH 134 567888999****************************************9765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.248 | 77 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-10 | 80 | 141 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-13 | 80 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.56E-10 | 82 | 138 | No hit | No description |
Pfam | PF00046 | 7.7E-12 | 82 | 135 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-13 | 82 | 131 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 145 aa Download sequence Send to blast |
MKETYGNESS DSSDEDFEGG PSPKEREIRS AKATMTSPSS TLVDTKYQSG KQKGSRHASD 60 RGLCEKLKIG GMDTSELHSS GKKKTYREGA IKRLYESFKE NQYPDRDANE KLGKELGLTA 120 HQVSKWFENA RHCHRHSSRW DSIMS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016459421.1 | 1e-104 | PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 | ||||
TrEMBL | A0A1S3Z4V1 | 1e-103 | A0A1S3Z4V1_TOBAC; pathogenesis-related homeodomain protein-like isoform X1 | ||||
STRING | XP_009592467.1 | 3e-86 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009602398.1 | 6e-91 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA24167 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19510.1 | 2e-09 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |