PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016459167.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GeBP | ||||||||
Protein Properties | Length: 179aa MW: 20719.7 Da PI: 10.7121 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 72.4 | 8.5e-23 | 118 | 178 | 2 | 62 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLK 62 +fqr+ws+eDei++L G++++++ ++ sps d +afy fvk++++++vsk+ql +K+++LK XP_016459167.1 118 NFQRIWSNEDEIAVLEGMLEYASARNISPSVDYNAFYIFVKDKLQVEVSKNQLKNKVKNLK 178 89**********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.5E-17 | 119 | 178 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MILVLKSSLR VKELPLRRRF FRREWKGSAG AENGVLRRSR EDLQPPEARS AVMYCGQRLW 60 ESERIWPKTT PIILLKESDK DWTPTSSKSI SSESHSNNRK KRTMKNSGKK GVSEAVNNFQ 120 RIWSNEDEIA VLEGMLEYAS ARNISPSVDY NAFYIFVKDK LQVEVSKNQL KNKVKNLKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016459167.1 | 1e-128 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A1S3Z4M8 | 1e-127 | A0A1S3Z4M8_TOBAC; mediator-associated protein 1-like | ||||
STRING | XP_009771958.1 | 2e-82 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3042 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 2e-11 | DNA-binding storekeeper protein-related transcriptional regulator |