PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459080.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HRT-like

Protein Properties

Length: 521aa MW: 57722.4 Da PI: 9.9464

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.2	1.2e-17	273	303	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l++GsvC+r+P+ g+KRC+eHKGm++ XP_016459080.1 273 TCGVALGHGSVCMRPPITGNKRCAEHKGMKV 303 7****************************97 PP
2	HRT-like	44.7	2.3e-14	336	365	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+il+ G +C r+P + +KRC eHKG+R XP_016459080.1 336 ICGFILDGGAPCARKPFQRNKRCLEHKGRR 365 8****************************9 PP
3	HRT-like	65.9	5.3e-21	422	452	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l dGs+C+rqPv gRKRCeeHKGmR+ XP_016459080.1 422 ICGVHLTDGSFCTRQPVAGRKRCEEHKGMRV 452 8*****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00719	0.00839	89	117	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MGDTHRSITV RLKREDCKRT KHDSAFSDWK ILIGPNDWTD YLLGKEGGAE KYRTQNLPNC 60 TSCSGVYELG VAVTRHQAGR EASRLDPDYI VPVYVGKSDN VRTRLQRYGR EGAHLENGCS 120 NSALHDQVNV SASKRAGLFT EAFSRGFSIV YRWAPMNDNK DAEKTESQLL DRFDYAWNKG 180 SNGLRRHNDV LHKLDGISRA TRLPAFVRKL QLSLEKQKGV RIKPCKPLLL ENGSDFHDSF 240 KSTYFLPQIF KFGRSKPRIV SLSSGVNGDP NTTCGVALGH GSVCMRPPIT GNKRCAEHKG 300 MKVNGVNSKL IAEGNSSVIN ESTRPCASRG EENAPICGFI LDGGAPCARK PFQRNKRCLE 360 HKGRRNRGCI SQPVTDKNGQ SLLEYRTYSS NDCHQMLSRR ADTQHPQDFS SCPLINQNHS 420 VICGVHLTDG SFCTRQPVAG RKRCEEHKGM RVKEPISKQL GAEIPSVFAG TAAKSSSGKK 480 HYNVDIPSVS RSPTCGQHCV MVLFAEGNLR KVLKDVGSTK S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MGDTHRSITV RLKREDCKRT KHDSAFSDWK ILIGPNDWTD YLLGKEGGAE KYRTQNLPNC  60
TSCSGVYELG VAVTRHQAGR EASRLDPDYI VPVYVGKSDN VRTRLQRYGR EGAHLENGCS  120
NSALHDQVNV SASKRAGLFT EAFSRGFSIV YRWAPMNDNK DAEKTESQLL DRFDYAWNKG  180
SNGLRRHNDV LHKLDGISRA TRLPAFVRKL QLSLEKQKGV RIKPCKPLLL ENGSDFHDSF  240
KSTYFLPQIF KFGRSKPRIV SLSSGVNGDP NTTCGVALGH GSVCMRPPIT GNKRCAEHKG  300
MKVNGVNSKL IAEGNSSVIN ESTRPCASRG EENAPICGFI LDGGAPCARK PFQRNKRCLE  360
HKGRRNRGCI SQPVTDKNGQ SLLEYRTYSS NDCHQMLSRR ADTQHPQDFS SCPLINQNHS  420
VICGVHLTDG SFCTRQPVAG RKRCEEHKGM RVKEPISKQL GAEIPSVFAG TAAKSSSGKK  480
HYNVDIPSVS RSPTCGQHCV MVLFAEGNLR KVLKDVGSTK S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779864.1	0.0	PREDICTED: uncharacterized protein LOC104228998
Refseq	XP_016459080.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A1S3Z3R6	0.0	A0A1S3Z3R6_TOBAC; protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A1U7WYW0	0.0	A0A1U7WYW0_NICSY; uncharacterized protein LOC104228998
STRING	XP_009779864.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7741	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	6e-93	effector of transcription2