PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459078.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 836aa MW: 92185.7 Da PI: 6.3

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.4e-19	16	74	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ XP_016459078.1 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP
2	START	179.1	2.6e-56	160	368	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++e+l+ + ++ g+++l XP_016459078.1 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAngGTIELL 253 789*****************************************************.8888888888************9999** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rdf+ +Ry+ + +g++v++++S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s v++v+h+dl++++++++lr+l+ XP_016459078.1 254 YMQLYAPTTLAPpRDFWLLRYSTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMDLEAWSVPEVLRPLY 348 **************************************99988899***************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+++ ++kt +a+l+++++ XP_016459078.1 349 ESSAVLAQKTSMAALRQLRQ 368 **************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.758	11	75	IPR001356	Homeobox domain
SMART	SM00389	2.3E-16	13	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.08E-17	13	77	IPR009057	Homeodomain-like
CDD	cd00086	8.50E-17	16	76	No hit	No description
Pfam	PF00046	1.1E-16	17	74	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-18	18	74	IPR009057	Homeodomain-like
CDD	cd14686	1.24E-5	68	107	No hit	No description
PROSITE profile	PS50848	26.931	150	365	IPR002913	START domain
CDD	cd08875	7.80E-76	154	369	No hit	No description
Gene3D	G3DSA:3.30.530.20	8.0E-25	159	365	IPR023393	START-like domain
SMART	SM00234	8.4E-43	159	369	IPR002913	START domain
SuperFamily	SSF55961	1.26E-37	159	364	No hit	No description
Pfam	PF01852	1.5E-53	160	368	IPR002913	START domain
Pfam	PF08670	1.5E-50	693	835	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence Send to blast
MSMSCKDGKS VDDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ 60 IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT 120 QTTKIASKDT SCESVVTSGQ HHLAPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIIAISHG CTGMAARACG LVGLDPTRVA EILKDRPSWY RDCRAVEVLN 240 MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LLRYSTVMDD GSLVVCERSL GNTQNGPSMP 300 PVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMDLEAWSV PEVLRPLYES SAVLAQKTSM 360 AALRQLRQIT LEASQPNVTN WGRRPAALRA LSKKLSRGFN EALNGFSSEG WSMLDNDGMD 420 DVTILVNSSP DKLMGLNLSF ADEFTSLSNA VLCAKASMLL QSVTPAVLLR FLREHRSEWV 480 DSDIDAYAAA AVKVGPCSLP GARVCNFGGQ VILPLAHTAE HEELLEVIKL EGVCHSPEDV 540 IMPRDMFLLQ MCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP 600 NRTLDLTSAL EIGPAESKVV NDKSTGVTSK SIMTIAFQFA FESHMQENVA SMARKYVRSF 660 ISSVQRVALA LSPSHFGSLG GLRLPLGTPE AHTLARWICQ SYRHYLGVEL PKLSGEGSES 720 VLESLWQHSD AIICCSAKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DEHGRKNLCS 780 EFPQIMQQGF ACLRGGICLS SMGRPVSYEK AVAWKVVNEE DNAHCISFMF VNWSFI

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence Send to blast

MSMSCKDGKS VDDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ  60
IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT  120
QTTKIASKDT SCESVVTSGQ HHLAPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGMAARACG LVGLDPTRVA EILKDRPSWY RDCRAVEVLN  240
MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LLRYSTVMDD GSLVVCERSL GNTQNGPSMP  300
PVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMDLEAWSV PEVLRPLYES SAVLAQKTSM  360
AALRQLRQIT LEASQPNVTN WGRRPAALRA LSKKLSRGFN EALNGFSSEG WSMLDNDGMD  420
DVTILVNSSP DKLMGLNLSF ADEFTSLSNA VLCAKASMLL QSVTPAVLLR FLREHRSEWV  480
DSDIDAYAAA AVKVGPCSLP GARVCNFGGQ VILPLAHTAE HEELLEVIKL EGVCHSPEDV  540
IMPRDMFLLQ MCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP  600
NRTLDLTSAL EIGPAESKVV NDKSTGVTSK SIMTIAFQFA FESHMQENVA SMARKYVRSF  660
ISSVQRVALA LSPSHFGSLG GLRLPLGTPE AHTLARWICQ SYRHYLGVEL PKLSGEGSES  720
VLESLWQHSD AIICCSAKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DEHGRKNLCS  780
EFPQIMQQGF ACLRGGICLS SMGRPVSYEK AVAWKVVNEE DNAHCISFMF VNWSFI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600774.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Refseq	XP_016459078.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1S3Z3Y3	0.0	A0A1S3Z3Y3_TOBAC; homeobox-leucine zipper protein ATHB-15-like isoform X1
STRING	XP_009600774.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]