PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459022.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 242aa    MW: 27145.1 Da    PI: 5.0259
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18136186255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr ++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  XP_016459022.1 136 HYRGVRVRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAAFAYDKAAFRMRG 186
                     8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.95E-30135194No hitNo description
Gene3DG3DSA:3.30.730.106.2E-31135194IPR001471AP2/ERF domain
SMARTSM003808.3E-37136200IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23136196IPR016177DNA-binding domain
PROSITE profilePS5103223.683136194IPR001471AP2/ERF domain
PfamPF008474.8E-12136186IPR001471AP2/ERF domain
PRINTSPR003678.7E-10137148IPR001471AP2/ERF domain
PRINTSPR003678.7E-10160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MYGNEEYEID YALLESVKCH LLDDWDNTPV TSSDISTTSI YSRNNSIESN VFPNCLPNEF  60
DYTADTFLYD IFNEGNGYEL EPASDPTIPN VKLEPEITAQ SPEVWNFTEF VVPPETAGEV  120
KVRPHVVTTA SPKAKHYRGV RVRPWGKFAA EIRDPAKNGA RVWLGTYETA EDAAFAYDKA  180
AFRMRGSRAL LNFPLRINSD EPDPIRVGSK RLSTSPEHSS SSPKKRKQNG SGRYSQLGAN  240
QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-39133201270ATERF1
3gcc_A1e-39133201270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459022.10.0PREDICTED: ethylene-responsive transcription factor 1A-like
TrEMBLA0A1S3Z4A01e-180A0A1S3Z4A0_TOBAC; ethylene-responsive transcription factor 1A-like
STRINGXP_009608915.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-45ethylene responsive element binding factor 2