PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459000.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 295aa MW: 33235.6 Da PI: 10.1038

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.8e-31	59	112	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWt++LH+rFv+ave+LGG+e+AtPk +l+lm++kgL ++hvkSHLQ+YR+ XP_016459000.1 59 VRLRWTTDLHRRFVHAVERLGGQERATPKLVLRLMDIKGLNIAHVKSHLQMYRS 112 59***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.529	55	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-29	55	113	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-7	60	111	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.2E-22	60	114	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.38E-14	60	113	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MMEDSDDTVC SKRSPNYSEK NEEEGNNSSI KLPKDGGSSS NSSVEVGEKV RPYVRSKMVR 60 LRWTTDLHRR FVHAVERLGG QERATPKLVL RLMDIKGLNI AHVKSHLQMY RSKKIDDPTQ 120 GVANHHRLFM EGGDPNIYNL NELPMLPTFN QRFNSTFRYG DASRNCLQST AERIFGNNHS 180 RAVDQDSITG IPSFISERST WRINEMKKLT PLFQRAAKAK ARLSLLKRKA IDCDLIDLNL 240 SLGVKQKNNS HNHDDGSTIS LSLTSAISPS RLKEDAHCAT KENARRGAST LDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016458998.1	0.0	PREDICTED: uncharacterized protein LOC107782615
Refseq	XP_016459000.1	0.0	PREDICTED: uncharacterized protein LOC107782615
TrEMBL	A0A1S3Z3I9	0.0	A0A1S3Z3I9_TOBAC; uncharacterized protein LOC107782615
STRING	XP_009622809.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-49	G2-like family protein