PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016458641.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 448aa MW: 50841.8 Da PI: 10.2441

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016458641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	383.1	3.3e-117	75	445	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+av+ ++++ a++lL+++++ +sp gd mqRla yf+ +L+ar+a+s++++y+al +++ s +++l+ ++l+ ++P+ k+s XP_016458641.1 75 LRTLLTLCAQAVAVENQRTANELLKQIRQSSSPMGDGMQRLAYYFADGLEARMAGSGTHIYRALITRPVS---AADVLKGYQLLLAACPFRKISS 166 5789************************************************************9999...99**************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N+aI++ +e++++vHiiD++i+ G+QWpaL+q L+sRp+gpp+lRiTg++ p++g + ++eetg+rL+++A++++vpfefn+ +a+++e+ XP_016458641.1 167 FFSNKAIMNLAENASKVHIIDIGIMWGFQWPALIQRLSSRPGGPPKLRITGIDFPHPGfrPAVRVEETGRRLTNYAKSFNVPFEFNA-IAQKWET 260 ****************************************************9999***********************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L++++gE+ +Vn+ ++ +llde+v+++s+r+ vL+l+ +l+P+v+++ + +n++ F +rf eal +ys+lfd+lea++pre +er+ XP_016458641.1 261 IKLEDLKINNGEVFVVNCLYRFRNLLDETVDVNSPRNVVLNLIGKLNPDVFILGIVNGAYNAPFFITRFREALFHYSSLFDMLEANIPREVHERM 355 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ +lgre++nv+ace aer+er et+++W+ r+++aGF+++pl+e+++ a + ++++ + ++ +s++l++gWk+r +++S W+ XP_016458641.1 356 LIEKNILGREAMNVIACEAAERIERPETYKQWQVRIMKAGFRQLPLDEEIMRMATERFKVYDKN-FVIDVDSEWLLQGWKGRIGYALSTWK 445 ******************************************************999966.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.57	49	426	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-114	75	445	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MFDRVLLCSA GKIESALRKT WQTISRRNAL ENGVSKGSNG KKSQGKKQGS KRDVVELNKN 60 SQAKKQGGKR DVVDLRTLLT LCAQAVAVEN QRTANELLKQ IRQSSSPMGD GMQRLAYYFA 120 DGLEARMAGS GTHIYRALIT RPVSAADVLK GYQLLLAACP FRKISSFFSN KAIMNLAENA 180 SKVHIIDIGI MWGFQWPALI QRLSSRPGGP PKLRITGIDF PHPGFRPAVR VEETGRRLTN 240 YAKSFNVPFE FNAIAQKWET IKLEDLKINN GEVFVVNCLY RFRNLLDETV DVNSPRNVVL 300 NLIGKLNPDV FILGIVNGAY NAPFFITRFR EALFHYSSLF DMLEANIPRE VHERMLIEKN 360 ILGREAMNVI ACEAAERIER PETYKQWQVR IMKAGFRQLP LDEEIMRMAT ERFKVYDKNF 420 VIDVDSEWLL QGWKGRIGYA LSTWKAAC

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MFDRVLLCSA GKIESALRKT WQTISRRNAL ENGVSKGSNG KKSQGKKQGS KRDVVELNKN  60
SQAKKQGGKR DVVDLRTLLT LCAQAVAVEN QRTANELLKQ IRQSSSPMGD GMQRLAYYFA  120
DGLEARMAGS GTHIYRALIT RPVSAADVLK GYQLLLAACP FRKISSFFSN KAIMNLAENA  180
SKVHIIDIGI MWGFQWPALI QRLSSRPGGP PKLRITGIDF PHPGFRPAVR VEETGRRLTN  240
YAKSFNVPFE FNAIAQKWET IKLEDLKINN GEVFVVNCLY RFRNLLDETV DVNSPRNVVL  300
NLIGKLNPDV FILGIVNGAY NAPFFITRFR EALFHYSSLF DMLEANIPRE VHERMLIEKN  360
ILGREAMNVI ACEAAERIER PETYKQWQVR IMKAGFRQLP LDEEIMRMAT ERFKVYDKNF  420
VIDVDSEWLL QGWKGRIGYA LSTWKAAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-56	82	444	26	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016458641.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S3Z2G9	0.0	A0A1S3Z2G9_TOBAC; scarecrow-like protein 14
STRING	XP_009800214.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-179	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]