PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016458635.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 546aa MW: 62644.6 Da PI: 5.0233 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 282.1 | 1.6e-86 | 172 | 544 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilk 92 lve Ll+ Ae v ++++ +aq+lL++ + +s++g+p+qRl+ yf +AL+ r++ ++ +++k + +++ + + + +++ + ++ P+ + XP_016458635.1 172 LVEYLLASAEKVGQKEFDRAQNLLNECDKSCSKKGNPIQRLVYYFCRALHDRINWeTGRGTSKGIGMKRLAYIEdsLMNLNSSMIAAHQSVPLSQ 266 5789**************************************************8789999999966666543332444445555599******* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 +++++ qaI + v ++e+vHiiD++i+ G+QW L+qaLa+ + ++ +l++T++ + ++++e t erL +fA++l+++f+fn++++++ XP_016458635.1 267 VTQFAGVQAIIDHVVESEKVHIIDLEIGSGMQWTILMQALATNQceSSFKHLKLTALCT---KLRHKIEDTCERLMSFAKSLNLSFSFNIVMVED 358 *****************************************998767778*******99...57999**************************** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 + +l+ e ++++ +Ea+++ ++ l+r+l+++ +l+ ++++++k+++P+ ++v+e ea+hns+ F++rf+eal +y a+fd+le + ++++ XP_016458635.1 359 IMELKQEYFELDDEEAVVIFAQYFLMRMLARPDKLD----ALMRVIKGINPRAMIVIEVEANHNSPVFVDRFVEALFFYGAFFDALEDCMKHDEK 449 *****************************6665555....5****************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ E e l++ i+ +va+eg+er+ rh + Wr+ + + G+++v+ls++ qa+l+l++++ + ++e ++ +l++gWk+ pL s+SaW+ XP_016458635.1 450 SRTATESEHLNQGIRIIVAAEGEERTIRHVKIDVWRMFFARYGMEEVELSKSSLYQANLVLKNFAcGSSCTLEMNQYCLLIGWKGTPLSSLSAWT 544 *****************************************************************9999*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.187 | 146 | 523 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.4E-84 | 172 | 544 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MWDSPKLYTI ESTEMDLDLF ASGLGKDQVV EEEQQQQQDE LQLLVDFVSL DDWDFDVVPL 60 QHQSNVEKTF QTKKSYEITE SKKSMETPLP SALKILKDYN NRFRRSKAEN NIISMQTDKS 120 KCKLSTDEIL RLGAEKFIQS FTISREEAYM FSHPFASSFL SLSEDDTRNI ALVEYLLASA 180 EKVGQKEFDR AQNLLNECDK SCSKKGNPIQ RLVYYFCRAL HDRINWETGR GTSKGIGMKR 240 LAYIEDSLMN LNSSMIAAHQ SVPLSQVTQF AGVQAIIDHV VESEKVHIID LEIGSGMQWT 300 ILMQALATNQ CESSFKHLKL TALCTKLRHK IEDTCERLMS FAKSLNLSFS FNIVMVEDIM 360 ELKQEYFELD DEEAVVIFAQ YFLMRMLARP DKLDALMRVI KGINPRAMIV IEVEANHNSP 420 VFVDRFVEAL FFYGAFFDAL EDCMKHDEKS RTATESEHLN QGIRIIVAAE GEERTIRHVK 480 IDVWRMFFAR YGMEEVELSK SSLYQANLVL KNFACGSSCT LEMNQYCLLI GWKGTPLSSL 540 SAWTFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-37 | 195 | 543 | 26 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800222.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_016458635.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S3Z2I1 | 0.0 | A0A1S3Z2I1_TOBAC; DELLA protein RGL1-like | ||||
TrEMBL | A0A1U7Y7W4 | 0.0 | A0A1U7Y7W4_NICSY; DELLA protein RGL1-like | ||||
STRING | XP_009800222.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3427 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-57 | RGA-like 2 |