PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458530.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 104aa    MW: 11541.1 Da    PI: 5.22
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB147.13.7e-461195286
           NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                    +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvt+eas+kc++e+rkt+ngdd++wal+tlGf+dy  ++k +
  XP_016458530.1 11 KEQDRLLPIANVGRIMKQTLPPNAKISKEAKETMQECVSEFIGFVTGEASEKCRKERRKTVNGDDVCWALGTLGFDDYGGTMKRF 95
                    89****************************************************************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-43494IPR009072Histone-fold
SuperFamilySSF471131.71E-321394IPR009072Histone-fold
PfamPF008084.5E-271680IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.2E-94462No hitNo description
PRINTSPR006153.2E-96381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MAQNDEGSNS KEQDRLLPIA NVGRIMKQTL PPNAKISKEA KETMQECVSE FIGFVTGEAS  60
EKCRKERRKT VNGDDVCWAL GTLGFDDYGG TMKRFELSTC GTMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-391195286Transcription factor HapC (Eurofung)
4g92_B4e-391195286Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-69HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795246.15e-73PREDICTED: nuclear transcription factor Y subunit B-5-like
RefseqXP_009795247.15e-73PREDICTED: nuclear transcription factor Y subunit B-5-like
RefseqXP_016458530.15e-73PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-48NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1S3Z2871e-71A0A1S3Z287_TOBAC; nuclear transcription factor Y subunit B-5-like
TrEMBLA0A1U7Y0141e-71A0A1U7Y014_NICSY; nuclear transcription factor Y subunit B-5-like
STRINGXP_009795246.12e-72(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-51nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]