PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016458396.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 758aa MW: 83732 Da PI: 6.4725 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.6e-20 | 90 | 145 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+ q+k+WFqN+R+++k XP_016458396.1 90 KKQYHRHTQHQIQELEAFFKECPHPDDKQRKDLGKRLGLEPLQIKFWFQNKRTQMK 145 688999***********************************************998 PP | |||||||
2 | START | 220.1 | 7.1e-69 | 277 | 498 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el+++a+ +ep+W +ss e++ ++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ +a ka+tl XP_016458396.1 277 ELAVAAMEELIRLAETREPLWIQSSensaEILSEEEYARTFPRGVGpkslgLKSEASRESAVVIMNHINLVEILMDVN-QWTSFFAglvsKATTL 370 57899********************99999***********99777********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+s+g galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ + v R++++pSg+li++++ng+sk+tw+ehv XP_016458396.1 371 EVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPTS---VVSRCRRRPSGCLIQELPNGYSKITWIEHV 462 ***********************************************************966...5***************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r +h+++r+lv+sgla+gak+wvatl+rqce+ XP_016458396.1 463 EVDDRAVHSIYRPLVNSGLAFGAKRWVATLDRQCER 498 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.63E-18 | 76 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 78 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.277 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.1E-18 | 89 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-17 | 90 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.50E-17 | 90 | 148 | No hit | No description |
SuperFamily | SSF55961 | 5.22E-39 | 268 | 500 | No hit | No description |
PROSITE profile | PS50848 | 47.734 | 268 | 501 | IPR002913 | START domain |
CDD | cd08875 | 1.38E-129 | 272 | 497 | No hit | No description |
SMART | SM00234 | 1.2E-69 | 277 | 498 | IPR002913 | START domain |
Pfam | PF01852 | 3.7E-58 | 278 | 498 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.2E-7 | 346 | 498 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.13E-24 | 516 | 750 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MCLHLRTYLP FHSPNDLKSL VSFAKKEKFV KMFQQNMFDS HNFLLDLSHK TSENEMDLIR 60 DDEFESKSGA DTTELAPSGD DQDPNKRPKK KQYHRHTQHQ IQELEAFFKE CPHPDDKQRK 120 DLGKRLGLEP LQIKFWFQNK RTQMKAHHER HENTQLRNEN EKLRAENIRY KEALSTATCP 180 NCGGPAAIGE MSFDEQHLRI ENARLREEID RISGIAAKYV GKPMLNYPQL PSPIPPTRSL 240 DLGVASFGHQ LGEMYNAGDL LRSISGPTDA DKPMIIELAV AAMEELIRLA ETREPLWIQS 300 SENSAEILSE EEYARTFPRG VGPKSLGLKS EASRESAVVI MNHINLVEIL MDVNQWTSFF 360 AGLVSKATTL EVLSTGVAGN YNGALQVMTA EFQVPSPLVP TRENYFVRYC KQHADGTWAV 420 VDVSLDNLRP TSVVSRCRRR PSGCLIQELP NGYSKITWIE HVEVDDRAVH SIYRPLVNSG 480 LAFGAKRWVA TLDRQCERLA SVMANNIPTG DVITSPEGRK SMLKLAERMV MSFCAGVGAS 540 TAHTWTTLSG SGADDVRVMT RKSIDDPGRP PGIVLSAATS FWLPVPTKRV FDFLRNENSR 600 NEWDILSNGG LVQEMAHIAN GRDSGNSVSL LRVNSGNSSQ NNMLILQESC TDSTGSYVIY 660 APVDIAAMNV VLSGGDPDYV ALLPSGFAIL PDGSATTNGV GINLETNSAG GSLLTVAFQI 720 LVDSVPTAKL SLGSVATVNS LIKCTVERIK ASIVCESA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609606.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1 | ||||
Refseq | XP_016458396.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A1S3Z1Q6 | 0.0 | A0A1S3Z1Q6_TOBAC; homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1 | ||||
STRING | XP_009609606.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |