PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458320.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 272aa    MW: 30697.2 Da    PI: 6.5111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-182171155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++ GVr+++ +g+WvAeI+  +   ++ r +lg+f+taeeAa+a+++a+  l+g
  XP_016458320.1 21 KKFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDTAEEAAQAYDEAACLLRG 71
                    589*******.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.09E-322178No hitNo description
PfamPF008474.9E-132271IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-192279IPR016177DNA-binding domain
PROSITE profilePS5103219.4272279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-272280IPR001471AP2/ERF domain
SMARTSM003807.2E-362285IPR001471AP2/ERF domain
PRINTSPR003677.2E-82334IPR001471AP2/ERF domain
PRINTSPR003677.2E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEQEQVYDST KEWSAKVPKQ KKFVGVRQRP SGKWVAEIKN TTQKIRMWLG TFDTAEEAAQ  60
AYDEAACLLR GSNTRTNFHN HAPVNPALSI KIRNLLNHKK SLNKIKSKTT PRNPTITTPT  120
ATTSTTISSC TSSFSVSNSF SSNTDTSDSR SHQETQIFGD AYKPDLSFFM GGFDQMGSST  180
FDHSSTFSTD FDRIFLDEKV GNFQVPKGGV VHEIGNVEDQ IPEFEHMKVE RQISASLYAM  240
NGVNEYWENI HDCNIDAAFW DLPMLYQMFC PS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458320.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1S3Z1P60.0A0A1S3Z1P6_TOBAC; ethylene-responsive transcription factor RAP2-11-like
STRINGXP_009614418.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-32related to AP2 11