PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016458260.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 996aa MW: 111271 Da PI: 7.1129

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016458260.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.3	4.6e-09	224	284	21	82
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ + +yf XP_016458260.1 224 QGRGKTRADKDREVADFLNRHGVSRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ-GSKSYF 284 45788999999**************************************974444.355666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.510.10	2.2E-6	810	943	No hit	No description
CDD	cd00180	9.57E-16	828	981	No hit	No description
SuperFamily	SSF56112	1.34E-16	838	980	IPR011009	Protein kinase-like domain

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MDENKGETTK KQPPPPQQQH LSNSPNDSNQ DSPDNTIPQQ QPPQPVISGA SYISSSLYNI 60 PGGAATTSVS FEQQQQQLQF EVVNPKRPRY TASQWKFIPS SSSQQQQQNP SQVNILSTES 120 SPISPSPQAA AATNPQTQAA SSSDTASSPS HSPRPSASGQ ETSKGEGGEQ VHQQFRKGKY 180 VSPVWKPNEM LWLARAWKIQ YQGGSSELHL EGSQEMSTGA GVQQGRGKTR ADKDREVADF 240 LNRHGVSRDA KTAGTKWDNM LGEFRKVYEW ERGAEREQGS KSYFRLSPYE RKMNRLPASF 300 DEEVFEELSQ FMGSRMRSPQ TRGVGAGFGS QANIVVSLSD TVTKSLPPPP PFREDDLPLS 360 ARAKQLAIPI SGTEALLHGT RSGFLGYDTT TTSSLDIGGP SSSASSKELR RIGKIRMIWE 420 ESVSLWAEEG EHHRGRVKLQ GTSFLNADEI AFLDDSTVAC TMEAFEDGPM KGFSVDRFLS 480 GVQLKVFGRR KSSSAPALSG PNERLQLPSS EFPIKSTTPW EFQDPTEYYV GCLRSPPPTL 540 PSLFELSWHL QQPPPEELRF PLRRDVFKDL PQGKELFFTI STELLDCRGI TYEVLSSIMR 600 PNPSLSTATD RDSYIGLWDD CINRIISKFC SIEMVFVRKS NSSFSLAETV QDQWPNVTAF 660 LRNFCLWRGE ETGQLSEGQL DPSSSIVEKL LWTYMDLPYV LGYYAVGFIV TFCALSRSQD 720 RIIRTDLYTV DLSTPVERLK ALVPCWRIAG LLPLLADRCF HYMSSNGSNL KHLPYTDFER 780 IDLGNGNIVE MTPNTVVRYF SSKRKWVAVK EIYDFLDHRI PHAEFVVRAS EKDLALVFKP 840 RGCKFKPANC DQLIEALKQI TKALVALHDL SFMHRDLGWD KVMRRSDREN EWFITGFDEA 900 VSSPQLYPYG GAAAATAASG RHPPEMVRNY HNVKVDVWGI GQLVKSCGLV GVPKLLRELQ 960 NRCLDQNPEQ RPTAADCYRH LLQLQSSMSA AAAGGY

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MDENKGETTK KQPPPPQQQH LSNSPNDSNQ DSPDNTIPQQ QPPQPVISGA SYISSSLYNI  60
PGGAATTSVS FEQQQQQLQF EVVNPKRPRY TASQWKFIPS SSSQQQQQNP SQVNILSTES  120
SPISPSPQAA AATNPQTQAA SSSDTASSPS HSPRPSASGQ ETSKGEGGEQ VHQQFRKGKY  180
VSPVWKPNEM LWLARAWKIQ YQGGSSELHL EGSQEMSTGA GVQQGRGKTR ADKDREVADF  240
LNRHGVSRDA KTAGTKWDNM LGEFRKVYEW ERGAEREQGS KSYFRLSPYE RKMNRLPASF  300
DEEVFEELSQ FMGSRMRSPQ TRGVGAGFGS QANIVVSLSD TVTKSLPPPP PFREDDLPLS  360
ARAKQLAIPI SGTEALLHGT RSGFLGYDTT TTSSLDIGGP SSSASSKELR RIGKIRMIWE  420
ESVSLWAEEG EHHRGRVKLQ GTSFLNADEI AFLDDSTVAC TMEAFEDGPM KGFSVDRFLS  480
GVQLKVFGRR KSSSAPALSG PNERLQLPSS EFPIKSTTPW EFQDPTEYYV GCLRSPPPTL  540
PSLFELSWHL QQPPPEELRF PLRRDVFKDL PQGKELFFTI STELLDCRGI TYEVLSSIMR  600
PNPSLSTATD RDSYIGLWDD CINRIISKFC SIEMVFVRKS NSSFSLAETV QDQWPNVTAF  660
LRNFCLWRGE ETGQLSEGQL DPSSSIVEKL LWTYMDLPYV LGYYAVGFIV TFCALSRSQD  720
RIIRTDLYTV DLSTPVERLK ALVPCWRIAG LLPLLADRCF HYMSSNGSNL KHLPYTDFER  780
IDLGNGNIVE MTPNTVVRYF SSKRKWVAVK EIYDFLDHRI PHAEFVVRAS EKDLALVFKP  840
RGCKFKPANC DQLIEALKQI TKALVALHDL SFMHRDLGWD KVMRRSDREN EWFITGFDEA  900
VSSPQLYPYG GAAAATAASG RHPPEMVRNY HNVKVDVWGI GQLVKSCGLV GVPKLLRELQ  960
NRCLDQNPEQ RPTAADCYRH LLQLQSSMSA AAAGGY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016458260.1	0.0	PREDICTED: uncharacterized protein LOC107781956
TrEMBL	A0A1S3Z1J3	0.0	A0A1S3Z1J3_TOBAC; uncharacterized protein LOC107781956
STRING	XP_009630947.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein