PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458188.1
Common NameNtmybB
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 588aa    MW: 65526.2 Da    PI: 7.9673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-1957100448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      WT+eEd ll d+vk++ g++Wk+Ia++m+ gRt+ qc +rwqk+l
   XP_016458188.1  57 WTEEEDNLLTDVVKRFKGRNWKKIAECMN-GRTDVQCLHRWQKVL 100
                      *****************************.************986 PP

2Myb_DNA-binding58.81.2e-18106152148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd+l++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
   XP_016458188.1 106 KGPWSKEEDDLIIELVEKYGCKKWSFIAKSLP-GRIGKQCRERWHNHL 152
                      79******************************.*************97 PP

3Myb_DNA-binding51.42.5e-16158200145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r++WT++E+  l ++++ +G++ W+ Iar ++ gRt++ +k++w+
   XP_016458188.1 158 RDAWTEQEESVLCHYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 200
                      789*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.09647100IPR017930Myb domain
SMARTSM007171.1E-1453102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2356116IPR009057Homeodomain-like
SuperFamilySSF466891.65E-1556110IPR009057Homeodomain-like
PfamPF002493.3E-1657100IPR001005SANT/Myb domain
CDDcd001671.86E-1457100No hitNo description
PROSITE profilePS5129431.084101156IPR017930Myb domain
SuperFamilySSF466895.99E-32103199IPR009057Homeodomain-like
SMARTSM007174.1E-17105154IPR001005SANT/Myb domain
PfamPF002493.7E-18106152IPR001005SANT/Myb domain
CDDcd001672.65E-16108152No hitNo description
Gene3DG3DSA:1.10.10.601.1E-27117159IPR009057Homeodomain-like
PROSITE profilePS5129419.973157207IPR017930Myb domain
SMARTSM007175.8E-15157205IPR001005SANT/Myb domain
PfamPF002497.2E-14158201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21160206IPR009057Homeodomain-like
CDDcd001673.46E-11160200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MIQVKEESQT LDFGGFASCS SFSDSSYEAS TPRYSSEPGS SYRRSSGPTK RSSQAGWTEE  60
EDNLLTDVVK RFKGRNWKKI AECMNGRTDV QCLHRWQKVL NPELVKGPWS KEEDDLIIEL  120
VEKYGCKKWS FIAKSLPGRI GKQCRERWHN HLDPTIKRDA WTEQEESVLC HYHQIYGNKW  180
AEIARFLPGR TDNAIKNHWN SSVKKRSNLN LPSGLVLDTE SEESPNFSSD KKKLEIQKHP  240
LQAQNAEQTI FLGEQTGLDN AAVALSTDLR IGYAYSAGNA LHKDTSLFGA CISAEENVRD  300
LIKPLGGIPF GKADVLPIGE TDKPCQSNLS RTKISYPLSA SSSDFPLDQL HHTRWSTSQV  360
EAVHPTTFGS MYESPKRSRH DTVNDPDHDF LSLSLASFTE VRSQSNKKNK AYDTQSSLGL  420
KQQGSLYYEP PQLKDMLIPL TDENLSRDNL ITEKNGHPFC STPPSLKLTV SANGSSPESV  480
LRNSAMSYTG TPSIIRKKNS RFPEAATHSS CTGTTTPTHN FPRASDREDT SNLKDRFSGC  540
KSSVSGKSLG RRLEYAFDME WDASRCCTPV SAASPCALRL GANTMLTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-65572069158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-65572069158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377ESPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0561240.0AB056124.1 Nicotiana tabacum NtmybB mRNA for Myb, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458188.10.0PREDICTED: myb-related protein B-like
RefseqXP_016458190.10.0PREDICTED: myb-related protein B-like
RefseqXP_016458191.10.0PREDICTED: myb-related protein B-like
RefseqXP_016458192.10.0PREDICTED: myb-related protein B-like
RefseqXP_016458193.10.0PREDICTED: myb-related protein B-like
TrEMBLA0A1S3Z1C00.0A0A1S3Z1C0_TOBAC; myb-related protein B-like
STRINGXP_009761862.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-80Homeodomain-like protein