PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458034.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 468aa    MW: 53077 Da    PI: 7.2633
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-1579128255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r +  rg++vAe++dps   k kr++lg+f+ta +Aa+a++ a+ kl+g
  XP_016458034.1  79 RYRGIRLR--RGKFVAEVCDPSR--KGKRIWLGTFDTAIDAARAYDTAAFKLRG 128
                     7****975..6******888743..34*************************98 PP
2RWP-RK567.5e-18285333452
          RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      i+ e l+++F +++ dAAk+L v+ ++LKr CR+y+I+RWPh k +++
  XP_016458034.1 285 GITREILEQHFGKTLVDAAKTLRVSRSTLKRVCREYNISRWPHHKTRKV 333
                     58999****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.71E-2578138No hitNo description
SuperFamilySSF541714.32E-1879137IPR016177DNA-binding domain
SMARTSM003807.4E-3079142IPR001471AP2/ERF domain
PfamPF008477.0E-1079128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2579136IPR001471AP2/ERF domain
PROSITE profilePS5103219.80979136IPR001471AP2/ERF domain
PRINTSPR003677.1E-78091IPR001471AP2/ERF domain
PRINTSPR003677.1E-7118138IPR001471AP2/ERF domain
PROSITE profilePS5151912.901268356IPR003035RWP-RK domain
PfamPF020422.1E-18286333IPR003035RWP-RK domain
SuperFamilySSF542778.83E-18379466No hitNo description
Gene3DG3DSA:3.10.20.2401.9E-16383463No hitNo description
SMARTSM006662.2E-13383465IPR000270PB1 domain
PROSITE profilePS5174519.998383465IPR000270PB1 domain
PfamPF005646.2E-15384464IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MASLQQLTLD LIRQDLLDDI IFAENYGLSE TNTSFDSKTE LNSFKFEAKA PRISSNSRKF  60
SSKTEDSVQK MENTLGTKRY RGIRLRRGKF VAEVCDPSRK GKRIWLGTFD TAIDAARAYD  120
TAAFKLRGSR AILNFPPQKK DMELRLPEIN GIFYPKDNDS QRSENNGTAL LVPHDLFNNE  180
GLEQVDLLLP HATEATVMNR GSMVNANVAH DQCNDGGEIV QPDLHCVKSF VEIDSRSNDK  240
VEHNDIARGS SSCERLLVEA DAMTNIQNVD SMNKCTIARL EKDYGITREI LEQHFGKTLV  300
DAAKTLRVSR STLKRVCREY NISRWPHHKT RKVYHRVSQG VSLQSAEQYV EDTQQCPDLS  360
QEKGTDLLAH KKSPAAEKPC DNLMTLKVTY RGDIIKFQLS PSSTRVELEV EVEKRLNISL  420
QRFSIKYQDD DDDWILITSN SDLSYGMNSL RLLGRTTMKL LVTPISET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2178136160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458034.10.0PREDICTED: uncharacterized protein LOC107781775
TrEMBLA0A1S3Z0N50.0A0A1S3Z0N5_TOBAC; uncharacterized protein LOC107781775
STRINGXP_009603064.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1571547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-17ethylene responsive element binding factor 2