PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016457979.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 502aa    MW: 57273.3 Da    PI: 8.6906
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016457979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.54.2e-2964147186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++e+laL+++r++m+ ++r+++lk+plW+e+s+km e g++r++k+C+ek+en+ k++k++k+g+++r  ++ +++++f+qle
  XP_016457979.1  64 RWPHDETLALLKIRSQMDIAFRDSNLKGPLWDEISRKMVELGYNRNAKKCREKFENIYKYHKRTKDGRSGR--QTGKNYRFFEQLE 147
                     8********************************************************************97..56668******97 PP
2trihelix93.61.9e-29362447186
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k ev aLi++r++++ ++ + g+ k+plWe++s+ m++ g+ r++k+Ckekwen+nk+y+++ke++k+r +e+s+tcpyf+ l+
  XP_016457979.1 362 RWPKAEVEALIKLRTNVDLQYPDnGSPKGPLWEDISSGMKKLGYDRNAKRCKEKWENINKYYRRVKESQKRR-PEDSKTCPYFHLLD 447
                     8*****************99996489********************************************97.9**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003461123IPR001005SANT/Myb domain
CDDcd122031.43E-2263128No hitNo description
PROSITE profilePS500907.09763121IPR017877Myb-like domain
PfamPF138373.5E-1963147No hitNo description
SMARTSM007170.052359422IPR001005SANT/Myb domain
PfamPF138373.1E-22361449No hitNo description
PROSITE profilePS500906.911362420IPR017877Myb-like domain
CDDcd122031.62E-20362427No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MLETSVLLEN SATAAAGGAA VTQAVELKND GGSGGGSVGG GSEEEERSRG ELEGEKNNIS  60
GGNRWPHDET LALLKIRSQM DIAFRDSNLK GPLWDEISRK MVELGYNRNA KKCREKFENI  120
YKYHKRTKDG RSGRQTGKNY RFFEQLELLD NQVNRTDTTT SISMPVPMPM PMTMIKPATS  180
GCQDFTYRNQ GFNPEFMSTS TSTTSSSGKE SDGSVKKKRK LAGYFERLMK QVLDKQEDLQ  240
NKFLEAIEKC ERDRIEREET WKMQEIARLK KEKEALANER AISAAKDAAV IAFLQKISEQ  300
TVQVQSPMKL SHEKKTENSS VKTVESQENV LQQDNDKQEN MLDKQDIIDS AGENSFHMSS  360
CRWPKAEVEA LIKLRTNVDL QYPDNGSPKG PLWEDISSGM KKLGYDRNAK RCKEKWENIN  420
KYYRRVKESQ KRRPEDSKTC PYFHLLDSIY QNKSKKQLLS SENPGSSMKA GELLMQIMNQ  480
QQQQQQQLET ENIHRQNVEQ SQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-114HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766495.10.0PREDICTED: trihelix transcription factor GT-2-like
RefseqXP_016457979.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A1S3Z0J00.0A0A1S3Z0J0_TOBAC; trihelix transcription factor GT-2-like
TrEMBLA0A1U7VX140.0A0A1U7VX14_NICSY; trihelix transcription factor GT-2-like
STRINGXP_009766495.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-70Trihelix family protein