PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016457776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 25468.7 Da PI: 4.7826 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.2e-09 | 71 | 118 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f+eL ++l + + K +K++iL A++ +++L XP_016457776.1 71 SKACRERLRREKLNERFSELCSVLEPG---RPVKTDKMAILGDAIRVLNEL 118 6789**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.87E-8 | 65 | 121 | No hit | No description |
PROSITE profile | PS50888 | 13.179 | 67 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-12 | 68 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-7 | 71 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-8 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-11 | 74 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MDQLDSFRDN NWDLIDINSF IDEAPSDFFW NDQIQNQNQR AVTELEAPLS SATFQEECIE 60 TECPRKSKQG SKACRERLRR EKLNERFSEL CSVLEPGRPV KTDKMAILGD AIRVLNELKT 120 ESEEYKEMNQ KLMEEIKTLK AEKNELREEK LALKADKERM EQELKATATP ASFIPPHPAA 180 YQPAVNKMAV FPSYGYVPMW QYLPPSSRDT SQDHALRPPA A |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 6e-93 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009775141.1 | 1e-164 | PREDICTED: transcription factor bHLH104 isoform X2 | ||||
Refseq | XP_016457776.1 | 1e-164 | PREDICTED: transcription factor bHLH104-like isoform X2 | ||||
Swissprot | Q8L467 | 4e-68 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A1S3YZM7 | 1e-163 | A0A1S3YZM7_TOBAC; transcription factor bHLH104-like isoform X2 | ||||
TrEMBL | A0A1U7WD22 | 1e-163 | A0A1U7WD22_NICSY; transcription factor bHLH104 isoform X2 | ||||
STRING | XP_009775135.1 | 1e-160 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14410.2 | 4e-60 | bHLH family protein |