PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016457577.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 587aa    MW: 66093 Da    PI: 6.6128
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016457577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS247.55.1e-761645442374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++lL  cA a+++g+++++q+lL  l+el+s +gd+++Rlaa  ++AL + l+   s+s+ +++  +++ +++n +   ++l  f+++sP++++ 
  XP_016457577.1 164 EQLLNPCAVAITAGNQNRVQHLLYVLHELSSLNGDANHRLAARGLQALTHYLSTpcSTSTPSASAGVTTFASTNPKFFKNSLINFNDISPWFRIP 258
                     689**************************************************9533344444456666666667777777777*********** PP

            GRAS  95 hltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpf 176
                     + +aN+ Il+ +e++   + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ +  ++            +  +  ++L  fA+++++++
  XP_016457577.1 259 NSIANSSILQILEEHdqpQNLHILDIGVSHGVQWPTLLEELTHRSgGPPPLVRLTVITPTIENdqlkncpfvVGPAGYNFSSQLLAFAKAININL 353
                     ************999888999************************55666*******99665577889888888889999*************** PP

            GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nse.sFlerflealeyysalf 268
                     ++n l    l++l+ + ++ +++E+l+++ +++lh+l    +++++er+e+L+++ksl+Pk vv++e+++d+  ns  +F+++f++ +ey+++++
  XP_016457577.1 354 QINRLENYPLQNLDSQVINSSSDETLVICAQFRLHNLK---HNSPDERTELLRILKSLEPKGVVLSENNMDCscNSCrDFATGFSRRVEYMWKFL 445
                     ****9888*****************************9...66666788********************8875454349**************** PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                     ds+++ +    + r + Er++++ e+ +++++ g++    +e++e+W er++++GF    ++e+a + a+++l+k++ ++++rv++++g++ l W
  XP_016457577.1 446 DSTSVAY----KGRESAERRMMEGEAAKALTNMGEM----NERKETWCERMRNVGFVREMFGEDAIDGARAVLKKYDsNWEMRVDKKDGCVGLWW 532
                     ***9995....9999999999999***********9....88888********************************9999************** PP

            GRAS 363 kdrpLvsvSaWr 374
                     k++p+ ++S W+
  XP_016457577.1 533 KGEPVSFCSLWK 544
                     ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.017137523IPR005202Transcription factor GRAS
PfamPF035141.8E-73164544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MTIDEPEPNP TSDPISEWLN GTLSYIPSFL DELYSPDDFY GDSWWVPSES IDQERHINNN  60
NNDNNNLTPF NTRFDITTTS TIPLEPIISS HPTPLVSSKK RKGNDSDYNP KASRNNQNHR  120
IKDADDGEAI ADQRVPTKKS AGHKKAIHKS AGNNSNNKEG RWAEQLLNPC AVAITAGNQN  180
RVQHLLYVLH ELSSLNGDAN HRLAARGLQA LTHYLSTPCS TSTPSASAGV TTFASTNPKF  240
FKNSLINFND ISPWFRIPNS IANSSILQIL EEHDQPQNLH ILDIGVSHGV QWPTLLEELT  300
HRSGGPPPLV RLTVITPTIE NDQLKNCPFV VGPAGYNFSS QLLAFAKAIN INLQINRLEN  360
YPLQNLDSQV INSSSDETLV ICAQFRLHNL KHNSPDERTE LLRILKSLEP KGVVLSENNM  420
DCSCNSCRDF ATGFSRRVEY MWKFLDSTSV AYKGRESAER RMMEGEAAKA LTNMGEMNER  480
KETWCERMRN VGFVREMFGE DAIDGARAVL KKYDSNWEMR VDKKDGCVGL WWKGEPVSFC  540
SLWKIDPRTN ESWSSQSNRI KFERSTQLLH MNLIKSTSKS SVQANLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-3316054484473Protein SHORT-ROOT
5b3h_B3e-3316054430419Protein SHORT-ROOT
5b3h_E3e-3316054430419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7676610.0KJ767661.1 Nicotiana tabacum GRAS16 protein (GRAS16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594760.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
RefseqXP_016457577.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A1S3Z0D80.0A0A1S3Z0D8_TOBAC; nodulation-signaling pathway 1 protein-like
STRINGXP_009594760.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-157GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]