PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016457347.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 216aa MW: 24514.1 Da PI: 5.1464

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016457347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	6.7e-21	63	123	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ XP_016457347.1 63 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 123 89***************99************************************97 PP
2	Wus_type_Homeobox	101.1	8e-33	63	125	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq XP_016457347.1 63 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKDITFELSQHGQISETNVYNWFQNRRARSKRKQ 125 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.576	59	124	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.0E-17	61	126	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-18	61	126	IPR009057	Homeodomain-like
SMART	SM00389	6.6E-14	61	128	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-18	63	123	IPR001356	Homeobox domain
CDD	cd00086	5.47E-12	63	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEWENQQQQP PQRAEDMNGA AGGGGGMFVK VMTDEQMEVL RTRLGNLYCD PLITSAGHRI 60 SGRQRWTPTP VQLQILERIF DQGNGTPSKQ KIKDITFELS QHGQISETNV YNWFQNRRAR 120 SKRKQQGGGA TNNVESEVET EVESPNEKKT KPEDLQSSHM PTSRTEEGSS NPTGSFDQLS 180 FYAMSNPRMD QVIEKMEDPG SYHPYLHAEN YDMISQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	124	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016457347.1	1e-162	PREDICTED: WUSCHEL-related homeobox 8-like isoform X3
Swissprot	Q5QMM3	2e-60	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1S3YZS3	1e-161	A0A1S3YZS3_TOBAC; WUSCHEL-related homeobox 8-like isoform X3
STRING	XP_009597868.1	1e-139	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-54	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]