PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016456718.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 368aa MW: 39485.5 Da PI: 9.5047

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016456718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.1	1.9e-35	69	175	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......k 89 ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ +++ + + + XP_016456718.1 69 TPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVKWLLEHAEQAIIEATGTGTVPAIAVsVNGTLKI-------PttsplsN 156 6899************************************************************8888844421111111.......11112213 PP TCP 90 aaksaakskksqksaasal 108 +++++ +++k+++++++++ XP_016456718.1 157 RENDEISPQKRRRKSSTNS 175 3333334444444444334 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.2E-30	74	165	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.592	75	129	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MSNFHDPDDE CGTSELSNGA GGDPNDQKMD SNEFSDEKKV VLSALKKEPF DSDHHTLVPA 60 MPMPVATTTP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVKWLLE 120 HAEQAIIEAT GTGTVPAIAV SVNGTLKIPT TSPLSNREND EISPQKRRRK SSTNSEFIDM 180 GCLNKNAANV SQFAPVMTTP VTVAAGVAPP PGLIPVWAVS NGGVMVPSNA IWMIPATPPL 240 NVTNNNNNIN NNSIMQYPQL WTITPSMTPV FNLAAATRSI SSFAAATAAN IKGPSPMMVA 300 GPLSTEPKVG SNKSSMAPAS LSSSTGNRNN NNNDVKAHKL RDFSLEIYDR KELQFMGRSG 360 NQVASSKP

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MSNFHDPDDE CGTSELSNGA GGDPNDQKMD SNEFSDEKKV VLSALKKEPF DSDHHTLVPA  60
MPMPVATTTP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVKWLLE  120
HAEQAIIEAT GTGTVPAIAV SVNGTLKIPT TSPLSNREND EISPQKRRRK SSTNSEFIDM  180
GCLNKNAANV SQFAPVMTTP VTVAAGVAPP PGLIPVWAVS NGGVMVPSNA IWMIPATPPL  240
NVTNNNNNIN NNSIMQYPQL WTITPSMTPV FNLAAATRSI SSFAAATAAN IKGPSPMMVA  300
GPLSTEPKVG SNKSSMAPAS LSSSTGNRNN NNNDVKAHKL RDFSLEIYDR KELQFMGRSG  360
NQVASSKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016456718.1	0.0	PREDICTED: transcription factor TCP9-like
TrEMBL	A0A1S3YX44	0.0	A0A1S3YX44_TOBAC; transcription factor TCP9-like
STRING	XP_009620293.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13731	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	6e-53	TCP family protein