PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456515.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 462aa    MW: 51696.3 Da    PI: 6.9836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-16124169147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
   XP_016456515.1 124 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 169
                      899*****************************.***********996 PP
2Myb_DNA-binding569e-18176219146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_016456515.1 176 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 219
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.413119170IPR017930Myb domain
SMARTSM007172.4E-14123172IPR001005SANT/Myb domain
PfamPF002491.8E-15124169IPR001005SANT/Myb domain
SuperFamilySSF466897.49E-28124217IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-26125177IPR009057Homeodomain-like
CDDcd001671.22E-12127168No hitNo description
PROSITE profilePS5129427.288171225IPR017930Myb domain
SMARTSM007172.1E-14175223IPR001005SANT/Myb domain
PfamPF002493.0E-14176218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-20178224IPR009057Homeodomain-like
CDDcd001675.46E-11178218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSLSSSTSSS TSSCSPMSST SMGMFFADMN SLSITPKNYS ITSHDNESSK TRGSWDFQFL  60
NKEAFSQSLD EAETSEENNE TIDLNASCFN EEKQITMHSS TIFNSSSNIG KEITESGQSK  120
LCARGHWRPA EDAKLKELVA IYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRAFT  180
EEEEERLMAA HRLYGNKWAM IARLFPGRTD NAVKNHWHVI MARKYREQSS AHRRRKMGQF  240
VYRRTTLEED SNSSLFVSSS KEVAEVAMKG ETQTPIISVG QNSANPFGSL KINNDGPNGW  300
FVYGPNGSPH WAASVGEAIP STKTNVPLLS SYSPFCAPFD TLPGQCGNEE MNILNQQGRS  360
WERQREASNI SHNIISHHHH SLTPSNSLMM MNSMQQSQYL QFPYSNFSNV TTARAQIPSQ  420
VIVKEDRRTS SNSSSDNNSQ CDQCETIAPP PPFIDFLGVG AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-321242247107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9833310.0HG983331.1 Nicotiana benthamiana mRNA for SANT/HTH Myb transcription factor (SANT/HTH Myb gene), clone 3890.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456515.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A1S3YWT30.0A0A1S3YWT3_TOBAC; transcription factor MYB86-like
STRINGXP_009781411.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-77myb domain protein 105