PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456493.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 406aa    MW: 46232.7 Da    PI: 7.8379
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456493.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.6e-32234288155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR 
  XP_016456493.1 234 KTRIRWTQDLHDRFVECVNRLGGADKATPKAILKLMESDGLTIFHVKSHLQKYRN 288
                     68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-28233289IPR009057Homeodomain-like
SuperFamilySSF466897.53E-17233288IPR009057Homeodomain-like
PROSITE profilePS5129410.032233291IPR017930Myb domain
TIGRFAMsTIGR015572.4E-24234289IPR006447Myb domain, plants
PfamPF002492.0E-8238287IPR001005SANT/Myb domain
PfamPF143792.3E-21318365IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSIQRVGTQE RVPKNSAYAS DYTLEFARMP VQALHTQKQS SSYLGFSFPA ATSAEEVCQK  60
QQQQQQFFSN ANSSSNSTII GRIGSPSRAF FATERYLGLT QYDDQQDNCS QLSKNYDFQI  120
PSYGFLPDSP AEDFHPKLSL PPFIRSQFSS SQPFSPDHQV PYRSPFSSLT EKERILHLKR  180
KLLGEFDTPF DGNQDFSLPH NLCGSHLEYM RQESGFPSAN SNNSACSGGS VCNKTRIRWT  240
QDLHDRFVEC VNRLGGADKA TPKAILKLME SDGLTIFHVK SHLQKYRNAK YIPEPTDGKS  300
EKRNCSNNVS QIDSKTGMQI KEALQMQLEV QRRLHEQLEI QRKLQLRIEE QGKQLKMIFD  360
QQQRTTRSLL DTQNSSISTL EHDPSTLYDD MEVLVADNIR FPSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-22234291259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801945.10.0PREDICTED: uncharacterized protein LOC104247585
RefseqXP_016456493.10.0PREDICTED: uncharacterized protein LOC107780454
TrEMBLA0A1S3YWH30.0A0A1S3YWH3_TOBAC; uncharacterized protein LOC107780454
TrEMBLA0A1U7YT070.0A0A1U7YT07_NICSY; uncharacterized protein LOC104247585
STRINGXP_009801945.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.15e-73G2-like family protein